Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EHC64_RS02090 Genome accession   NZ_CP034289
Coordinates   409800..410330 (+) Length   176 a.a.
NCBI ID   WP_005466625.1    Uniprot ID   Q87LA3
Organism   Vibrio parahaemolyticus strain 20140722001-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 404800..415330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EHC64_RS02080 (EHC64_02145) galU 407747..408619 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  EHC64_RS02085 (EHC64_02150) qstR 408877..409521 (-) 645 WP_140103016.1 LuxR C-terminal-related transcriptional regulator Regulator
  EHC64_RS02090 (EHC64_02155) ssb 409800..410330 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  EHC64_RS02095 (EHC64_02160) - 410409..411827 (+) 1419 WP_236578028.1 site-specific integrase -
  EHC64_RS02100 (EHC64_02165) - 411834..413387 (+) 1554 WP_159408068.1 site-specific integrase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19563.62 Da        Isoelectric Point: 4.9269

>NTDB_id=288396 EHC64_RS02090 WP_005466625.1 409800..410330(+) (ssb) [Vibrio parahaemolyticus strain 20140722001-1]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQPQ
QQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=288396 EHC64_RS02090 WP_005466625.1 409800..410330(+) (ssb) [Vibrio parahaemolyticus strain 20140722001-1]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCGGTAGCAAACATCACGATTGCTACTTCTGAGTCATGGCGTGACAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTGTTCGGTAAGTTGGCAGAAGTTGCTGGTGAATACCTGCGTAAAGGTTCACAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGATCGCTACTCAACAGAAGTTGTGGTTCAAGGTTT
CAATGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCTGCAATGGGCGGTCAACAACAGCAGCAAGGCG
GTTGGGGTCAACCTCAACAACCGGCTCAGCAGCAATACAATGCACCTCAACAGCAGCAACAGGCTCCGCAGCAACCACAG
CAGCAATACAACGAGCCACCAATGGATTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.006

100

0.824
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.614
  ssb Neisseria meningitidis MC58

48.023

100

0.483
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.483

Multiple sequence alignment