Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DBV39_RS13905 | Genome accession | NZ_CP028901 |
| Coordinates | 3048667..3049194 (-) | Length | 175 a.a. |
| NCBI ID | WP_108622042.1 | Uniprot ID | A0A2R4XLD9 |
| Organism | Orrella marina strain HZ20 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3043667..3054194
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DBV39_RS13885 (DBV39_13885) | - | 3043967..3044590 (+) | 624 | WP_227870639.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| DBV39_RS13890 (DBV39_13890) | arsB | 3044741..3045775 (-) | 1035 | WP_108622039.1 | ACR3 family arsenite efflux transporter | - |
| DBV39_RS13895 (DBV39_13895) | - | 3045795..3046166 (-) | 372 | WP_108622040.1 | helix-turn-helix transcriptional regulator | - |
| DBV39_RS13900 (DBV39_13900) | - | 3046457..3048559 (+) | 2103 | WP_108622041.1 | acetate--CoA ligase family protein | - |
| DBV39_RS13905 (DBV39_13905) | ssb | 3048667..3049194 (-) | 528 | WP_108622042.1 | single-stranded DNA-binding protein | Machinery gene |
| DBV39_RS13910 (DBV39_13910) | - | 3049523..3051058 (+) | 1536 | WP_108622043.1 | M81 family metallopeptidase | - |
| DBV39_RS13915 (DBV39_13915) | - | 3051065..3051958 (+) | 894 | WP_108622044.1 | LysR family transcriptional regulator | - |
| DBV39_RS13920 (DBV39_13920) | - | 3052256..3053512 (+) | 1257 | WP_108622045.1 | D-amino acid dehydrogenase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19133.12 Da Isoelectric Point: 5.8271
>NTDB_id=288374 DBV39_RS13905 WP_108622042.1 3048667..3049194(-) (ssb) [Orrella marina strain HZ20]
MASVNKVILVGNLGRDPEVRHSADGAAICNLSIATTYVTKDRNTGDRREETEWHRVVMFNRLAEIAGEYLRKGRPVYIEG
RLRTRKWQNREGQDQYTTEIVAEQMQMLGSREGGGPGAGQGRNDTASGDYGTSQGQRSEFEQGTPTPPRPSAPRPAAPAS
SAAMNPGDLDDDIPF
MASVNKVILVGNLGRDPEVRHSADGAAICNLSIATTYVTKDRNTGDRREETEWHRVVMFNRLAEIAGEYLRKGRPVYIEG
RLRTRKWQNREGQDQYTTEIVAEQMQMLGSREGGGPGAGQGRNDTASGDYGTSQGQRSEFEQGTPTPPRPSAPRPAAPAS
SAAMNPGDLDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=288374 DBV39_RS13905 WP_108622042.1 3048667..3049194(-) (ssb) [Orrella marina strain HZ20]
ATGGCATCGGTTAACAAAGTGATTCTGGTGGGCAATCTTGGGCGCGATCCGGAAGTGCGTCATAGTGCTGATGGTGCAGC
GATCTGCAATCTGTCGATCGCGACAACTTACGTCACAAAAGATCGCAACACCGGAGATCGCCGGGAAGAAACCGAGTGGC
ATCGCGTTGTCATGTTCAATCGCCTGGCCGAGATTGCAGGCGAGTATCTGCGTAAAGGTCGTCCGGTTTATATCGAAGGT
CGTTTGCGCACCCGCAAGTGGCAGAACCGCGAAGGACAGGATCAGTACACCACCGAGATTGTTGCCGAGCAGATGCAGAT
GTTGGGGAGTCGTGAAGGCGGCGGACCTGGCGCAGGTCAAGGACGAAACGACACTGCGAGTGGTGACTATGGTACCTCTC
AGGGTCAGCGTTCCGAGTTTGAACAAGGTACACCAACACCGCCTCGCCCATCCGCACCCCGACCTGCCGCACCGGCTTCA
AGTGCGGCAATGAATCCGGGTGACCTGGACGATGACATCCCGTTCTGA
ATGGCATCGGTTAACAAAGTGATTCTGGTGGGCAATCTTGGGCGCGATCCGGAAGTGCGTCATAGTGCTGATGGTGCAGC
GATCTGCAATCTGTCGATCGCGACAACTTACGTCACAAAAGATCGCAACACCGGAGATCGCCGGGAAGAAACCGAGTGGC
ATCGCGTTGTCATGTTCAATCGCCTGGCCGAGATTGCAGGCGAGTATCTGCGTAAAGGTCGTCCGGTTTATATCGAAGGT
CGTTTGCGCACCCGCAAGTGGCAGAACCGCGAAGGACAGGATCAGTACACCACCGAGATTGTTGCCGAGCAGATGCAGAT
GTTGGGGAGTCGTGAAGGCGGCGGACCTGGCGCAGGTCAAGGACGAAACGACACTGCGAGTGGTGACTATGGTACCTCTC
AGGGTCAGCGTTCCGAGTTTGAACAAGGTACACCAACACCGCCTCGCCCATCCGCACCCCGACCTGCCGCACCGGCTTCA
AGTGCGGCAATGAATCCGGGTGACCTGGACGATGACATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50 |
100 |
0.526 |
| ssb | Vibrio cholerae strain A1552 |
48.387 |
100 |
0.514 |
| ssb | Neisseria gonorrhoeae MS11 |
47.027 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
46.486 |
100 |
0.491 |