Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EHC70_RS03215 | Genome accession | NZ_CP034285 |
| Coordinates | 618941..619399 (-) | Length | 152 a.a. |
| NCBI ID | WP_029847971.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 20140624012-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 613941..624399
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHC70_RS03195 (EHC70_03255) | coaE | 614462..615076 (-) | 615 | WP_031847490.1 | dephospho-CoA kinase | - |
| EHC70_RS03200 (EHC70_03260) | pilD | 615077..615946 (-) | 870 | WP_015297252.1 | A24 family peptidase | Machinery gene |
| EHC70_RS03205 (EHC70_03265) | pilC | 616011..617234 (-) | 1224 | WP_140103791.1 | type II secretion system F family protein | Machinery gene |
| EHC70_RS03210 (EHC70_03270) | pilB | 617259..618944 (-) | 1686 | WP_140103792.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EHC70_RS03215 (EHC70_03275) | pilA | 618941..619399 (-) | 459 | WP_029847971.1 | pilin | Machinery gene |
| EHC70_RS03220 (EHC70_03285) | nadC | 619665..620552 (-) | 888 | WP_140103793.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EHC70_RS03225 (EHC70_03290) | ampD | 620645..621196 (+) | 552 | WP_005462574.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EHC70_RS03230 (EHC70_03295) | pdhR | 621602..622369 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16193.62 Da Isoelectric Point: 9.0377
>NTDB_id=288322 EHC70_RS03215 WP_029847971.1 618941..619399(-) (pilA) [Vibrio parahaemolyticus strain 20140624012-1]
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAMPQYQKYVAKSEVASVLATLTGAKTNVEAYTVENGLFPNNVSDASPTAL
GVPDMPLGSVVFKRDDNTDGGTIEFTFTSVTSGASSLVATKNLTLTRTKEKGSWACSSTNLENELLPKTCKK
MKTNKQKKQQGFTLIELMIVVAVIGVLAAIAMPQYQKYVAKSEVASVLATLTGAKTNVEAYTVENGLFPNNVSDASPTAL
GVPDMPLGSVVFKRDDNTDGGTIEFTFTSVTSGASSLVATKNLTLTRTKEKGSWACSSTNLENELLPKTCKK
Nucleotide
Download Length: 459 bp
>NTDB_id=288322 EHC70_RS03215 WP_029847971.1 618941..619399(-) (pilA) [Vibrio parahaemolyticus strain 20140624012-1]
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACGCTGATTGAATTAATGATTGTGGTGGCAGTGATTGGTGTCTT
GGCGGCGATTGCAATGCCACAGTACCAAAAATACGTTGCCAAAAGCGAAGTAGCATCTGTTTTAGCCACACTTACTGGTG
CAAAAACTAACGTAGAAGCATACACAGTAGAAAACGGCTTATTTCCAAACAATGTCTCTGACGCATCACCGACGGCTTTG
GGTGTACCAGACATGCCGCTGGGAAGTGTAGTGTTTAAAAGGGATGATAATACTGATGGTGGTACAATAGAATTTACTTT
TACCTCAGTAACTAGCGGAGCAAGCTCCTTAGTAGCGACCAAAAATTTAACACTCACTAGAACAAAAGAAAAAGGGTCTT
GGGCTTGTTCATCTACCAACCTAGAAAATGAACTTCTCCCAAAAACCTGCAAAAAATGA
ATGAAAACGAATAAACAGAAGAAGCAGCAAGGTTTTACGCTGATTGAATTAATGATTGTGGTGGCAGTGATTGGTGTCTT
GGCGGCGATTGCAATGCCACAGTACCAAAAATACGTTGCCAAAAGCGAAGTAGCATCTGTTTTAGCCACACTTACTGGTG
CAAAAACTAACGTAGAAGCATACACAGTAGAAAACGGCTTATTTCCAAACAATGTCTCTGACGCATCACCGACGGCTTTG
GGTGTACCAGACATGCCGCTGGGAAGTGTAGTGTTTAAAAGGGATGATAATACTGATGGTGGTACAATAGAATTTACTTT
TACCTCAGTAACTAGCGGAGCAAGCTCCTTAGTAGCGACCAAAAATTTAACACTCACTAGAACAAAAGAAAAAGGGTCTT
GGGCTTGTTCATCTACCAACCTAGAAAATGAACTTCTCCCAAAAACCTGCAAAAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
46.753 |
100 |
0.474 |
| pilA | Vibrio cholerae C6706 |
46.753 |
100 |
0.474 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.753 |
100 |
0.474 |
| pilA | Pseudomonas aeruginosa PAK |
42.763 |
100 |
0.428 |
| pilA | Acinetobacter baumannii strain A118 |
42.657 |
94.079 |
0.401 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
46.721 |
80.263 |
0.375 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.356 |
96.053 |
0.368 |