Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DB847_RS02300 Genome accession   NZ_CP028897
Coordinates   440647..441894 (-) Length   415 a.a.
NCBI ID   WP_108649262.1    Uniprot ID   -
Organism   Dongshaea marina strain DM2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 435647..446894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB847_RS02275 mutT 437561..437959 (+) 399 WP_108652886.1 8-oxo-dGTP diphosphatase MutT -
  DB847_RS02280 yacG 438057..438245 (-) 189 WP_407644431.1 DNA gyrase inhibitor YacG -
  DB847_RS02285 zapD 438257..438987 (-) 731 Protein_424 cell division protein ZapD -
  DB847_RS02290 coaE 439015..439623 (-) 609 WP_234418492.1 dephospho-CoA kinase -
  DB847_RS02295 pilD 439626..440513 (-) 888 WP_108649261.1 A24 family peptidase Machinery gene
  DB847_RS02300 pilC 440647..441894 (-) 1248 WP_108649262.1 type II secretion system F family protein Machinery gene
  DB847_RS02305 pilB 441912..443618 (-) 1707 WP_108649263.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DB847_RS02310 - 443624..444064 (-) 441 WP_108649264.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DB847_RS02315 - 444701..445585 (+) 885 WP_108649240.1 IS982 family transposase -
  DB847_RS02320 nadC 445624..446463 (-) 840 WP_108649265.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45482.56 Da        Isoelectric Point: 9.4157

>NTDB_id=288323 DB847_RS02300 WP_108649262.1 440647..441894(-) (pilC) [Dongshaea marina strain DM2]
MATAAPARKAKIQKKIYPFSWKGVNRKGHKVSGELQSDSIASVKQELKKQGVTATRVTKKSQSLFAKYGDKVTPMDIAVI
SRQITTMLTAGVPLVQTLQLIAGSHEKASARQLIGQIAADVETGTPLSEALRKFPRQFDDLYCDLVEAGEQSGALETIYD
RVATYKEKAEILKSKIKKALFYPVTVIIVAIGVTSILLLFVIPQFEEIFQSFGAELPAFTKMVIAMSRFMQDYWYLLFGG
VIIIVVIYVQSHRHSQRVRNRTDIVLLGLPIVGIILHKAAMARFARTLSTTFAAGIPLVDALVSSASASGNYVYRSAIMS
VRTEVIAGMQMNVAMRTCNLFPDMLIQMVMIGEESGAIDEMLDKIANIYEQEVDDAIDGLTSLIEPLIMVVLGTLVGGMV
VAMYLPIFQMGSVVG

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=288323 DB847_RS02300 WP_108649262.1 440647..441894(-) (pilC) [Dongshaea marina strain DM2]
ATGGCAACCGCAGCACCGGCTCGAAAAGCCAAGATTCAAAAAAAGATCTACCCCTTCAGCTGGAAAGGGGTCAATCGTAA
GGGACATAAGGTTTCCGGAGAGCTTCAGTCTGACTCGATCGCCAGCGTCAAACAGGAGCTGAAAAAACAGGGTGTCACGG
CTACCCGGGTCACCAAGAAATCCCAATCCCTGTTTGCCAAATATGGTGACAAAGTCACCCCGATGGATATTGCGGTGATC
TCCCGCCAGATCACCACCATGCTTACCGCCGGAGTTCCATTGGTACAGACCCTGCAGCTGATCGCCGGCAGCCACGAAAA
AGCCTCAGCTCGCCAGCTGATCGGCCAGATTGCCGCCGATGTCGAAACCGGAACCCCCCTCTCGGAGGCGCTGCGCAAAT
TCCCGCGCCAGTTTGACGACCTCTACTGTGATCTGGTGGAAGCAGGAGAGCAATCAGGGGCTCTGGAAACCATTTATGAT
CGCGTCGCAACCTACAAAGAGAAAGCCGAGATCCTTAAATCCAAGATCAAAAAAGCCCTCTTCTATCCGGTGACCGTTAT
CATTGTCGCCATCGGCGTTACCTCTATTTTGCTGCTGTTCGTGATCCCCCAGTTTGAGGAGATCTTTCAAAGCTTTGGCG
CCGAGCTTCCGGCCTTTACCAAGATGGTGATCGCCATGTCCCGCTTCATGCAGGACTACTGGTACCTGCTGTTTGGTGGG
GTGATCATCATAGTCGTGATCTATGTCCAGTCGCACCGCCATTCCCAGAGAGTGAGAAATCGCACCGATATCGTGCTGTT
GGGGCTACCCATCGTCGGTATAATTCTGCACAAGGCGGCGATGGCTCGCTTTGCCCGAACCCTTTCCACCACCTTTGCCG
CCGGTATCCCCCTGGTGGATGCCCTGGTCTCTTCTGCCAGCGCCTCGGGTAACTATGTGTATCGCTCCGCCATCATGTCG
GTTCGAACCGAGGTGATCGCAGGAATGCAGATGAATGTGGCGATGCGCACCTGTAACCTGTTTCCGGACATGCTGATCCA
GATGGTGATGATAGGTGAGGAGTCCGGTGCAATTGATGAGATGCTGGATAAGATCGCCAACATCTATGAGCAGGAGGTCG
ATGATGCCATCGATGGCCTGACCAGCCTGATTGAGCCTCTGATCATGGTGGTCCTCGGGACCCTGGTGGGCGGTATGGTG
GTAGCTATGTACCTGCCTATCTTCCAGATGGGTAGCGTGGTTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(284-406)

Type II secretion system (T2SS), protein F (T2SSF)

(81-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.798

95.422

0.523
  pilC Acinetobacter baylyi ADP1

53.401

95.663

0.511
  pilC Acinetobacter baumannii D1279779

52.645

95.663

0.504
  pilC Legionella pneumophila strain ERS1305867

52.02

95.422

0.496
  pilC Vibrio cholerae strain A1552

47.103

95.663

0.451
  pilC Vibrio campbellii strain DS40M4

45.074

97.831

0.441
  pilG Neisseria meningitidis 44/76-A

41.045

96.867

0.398
  pilG Neisseria gonorrhoeae MS11

41.045

96.867

0.398

Multiple sequence alignment