Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DB847_RS01740 Genome accession   NZ_CP028897
Coordinates   336628..337221 (+) Length   197 a.a.
NCBI ID   WP_108649163.1    Uniprot ID   -
Organism   Dongshaea marina strain DM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 331628..342221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DB847_RS01730 - 332655..333392 (-) 738 WP_159084335.1 ABC transporter substrate-binding protein -
  DB847_RS01735 uvrA 333528..336356 (-) 2829 WP_108649162.1 excinuclease ABC subunit UvrA -
  DB847_RS01740 ssb 336628..337221 (+) 594 WP_108649163.1 single-stranded DNA-binding protein Machinery gene
  DB847_RS01745 - 337486..339516 (+) 2031 WP_108649164.1 EAL domain-containing protein -
  DB847_RS01750 - 339519..340409 (+) 891 WP_108649165.1 MSHA biogenesis protein MshI -
  DB847_RS01755 - 340406..341032 (+) 627 WP_108649166.1 PilN domain-containing protein -
  DB847_RS01760 gspM 341029..341682 (+) 654 WP_108649167.1 type II secretion system protein GspM -
  DB847_RS01765 - 341675..341998 (+) 324 WP_108649168.1 agglutinin biogenesis protein MshK -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22095.22 Da        Isoelectric Point: 6.4831

>NTDB_id=288321 DB847_RS01740 WP_108649163.1 336628..337221(+) (ssb) [Dongshaea marina strain DM2]
MASRGVNKVILIGNLGQDPEVRYMPNGNAVANITVATSETWRDKQTGEQKEQTEWHRVTLYRRLAEIAGEYLRKGSKVYL
EGRLQTRKWQDQSGQDRYTTEIVANEMQMLDSRGQGASNGNGFSQSAPQHQNNNWGQQAPQQPSAAQQAPMQQNSWGQQP
AQPQSRPAAPQAPAKPQQQNAQSYNEPPMDFDDDIPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=288321 DB847_RS01740 WP_108649163.1 336628..337221(+) (ssb) [Dongshaea marina strain DM2]
ATGGCCAGTCGGGGCGTCAATAAAGTGATTCTTATCGGAAATCTGGGGCAAGACCCGGAGGTCCGTTACATGCCTAACGG
CAATGCGGTAGCAAATATCACGGTAGCAACTTCAGAGACCTGGCGTGATAAGCAAACCGGTGAGCAAAAAGAGCAGACGG
AGTGGCACCGGGTTACTCTGTATCGCCGCCTGGCTGAAATTGCGGGTGAATACCTGCGTAAAGGTTCCAAAGTTTATCTG
GAAGGACGCCTGCAGACGCGTAAGTGGCAGGATCAGAGTGGCCAGGATCGCTATACGACAGAGATCGTTGCCAATGAGAT
GCAGATGCTGGATAGTCGTGGCCAGGGCGCTTCCAACGGCAACGGCTTTAGCCAGAGCGCTCCTCAGCATCAAAATAATA
ACTGGGGACAACAGGCTCCTCAGCAGCCATCTGCTGCACAGCAGGCTCCGATGCAGCAAAATAGCTGGGGGCAACAGCCC
GCACAGCCTCAGAGCCGTCCGGCGGCTCCTCAGGCGCCAGCTAAGCCTCAGCAGCAGAATGCTCAGAGCTATAATGAGCC
ACCGATGGATTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65.025

100

0.67
  ssb Glaesserella parasuis strain SC1401

53.608

98.477

0.528
  ssb Neisseria meningitidis MC58

49.479

97.462

0.482
  ssb Neisseria gonorrhoeae MS11

49.479

97.462

0.482

Multiple sequence alignment