Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Sa5Y_RS12350 | Genome accession | NZ_CP028892 |
| Coordinates | 2637995..2638528 (-) | Length | 177 a.a. |
| NCBI ID | WP_000168287.1 | Uniprot ID | A0A2A1YRC3 |
| Organism | Vibrio cholerae strain Sa5Y | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2632995..2643528
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Sa5Y_RS12330 (Sa5Y_VC02420) | - | 2633450..2633767 (-) | 318 | WP_000252812.1 | MSHA biogenesis protein MshK | - |
| Sa5Y_RS12335 (Sa5Y_VC02421) | gspM | 2633760..2634410 (-) | 651 | WP_094392771.1 | type II secretion system protein GspM | - |
| Sa5Y_RS12340 (Sa5Y_VC02422) | - | 2634407..2635846 (-) | 1440 | WP_000743253.1 | PilN domain-containing protein | - |
| Sa5Y_RS12345 (Sa5Y_VC02423) | csrD | 2635859..2637871 (-) | 2013 | WP_032472224.1 | RNase E specificity factor CsrD | - |
| Sa5Y_RS12350 (Sa5Y_VC02424) | ssb | 2637995..2638528 (-) | 534 | WP_000168287.1 | single-stranded DNA-binding protein | Machinery gene |
| Sa5Y_RS12355 (Sa5Y_VC02425) | qstR | 2638820..2639464 (+) | 645 | WP_094392772.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| Sa5Y_RS12360 (Sa5Y_VC02426) | galU | 2639637..2640509 (+) | 873 | WP_001920788.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| Sa5Y_RS12365 (Sa5Y_VC02427) | uvrA | 2640665..2643487 (+) | 2823 | WP_094392773.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19644.85 Da Isoelectric Point: 5.7626
>NTDB_id=288233 Sa5Y_RS12350 WP_000168287.1 2637995..2638528(-) (ssb) [Vibrio cholerae strain Sa5Y]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=288233 Sa5Y_RS12350 WP_000168287.1 2637995..2638528(-) (ssb) [Vibrio cholerae strain Sa5Y]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGAAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGCATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACTTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCTGGTGAATATTTGCGAAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGCATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
99.435 |
100 |
0.994 |
| ssb | Glaesserella parasuis strain SC1401 |
52.198 |
100 |
0.537 |
| ssb | Neisseria meningitidis MC58 |
47.778 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.778 |
100 |
0.486 |