Detailed information NTG0028787

Bioinformatically predicted

Overview

• Name: epdK
• Type: Machinery gene
• Locus tag: MBOO_RS09910
• Genome accession: NC_009712
• Coordinates: 1966400..1967449 (-)
• Length: 349 a.a.
• NCBI ID: WP_012107471.1
• Uniprot ID: -
• Organism: Methanoregula boonei 6A8
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1961400..1972449

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MBOO_RS09885 (Mboo_1898)	-	1962039..1962824 (+)	786	WP_048068435.1	CBS domain-containing protein	-
MBOO_RS09890 (Mboo_1899)	-	1962853..1964031 (-)	1179	WP_048068436.1	sugar phosphate nucleotidyltransferase	-
MBOO_RS09895 (Mboo_1900)	-	1964099..1964365 (+)	267	WP_012107468.1	hypothetical protein	-
MBOO_RS09900 (Mboo_1901)	-	1964380..1965822 (-)	1443	WP_012107469.1	cobyric acid synthase	-
MBOO_RS09905 (Mboo_1902)	yciH	1965941..1966246 (+)	306	WP_012107470.1	stress response translation initiation inhibitor YciH	-
MBOO_RS09910 (Mboo_1903)	epdK	1966400..1967449 (-)	1050	WP_012107471.1	type II secretion system F family protein	Machinery gene
MBOO_RS09915 (Mboo_1904)	epdJ	1967452..1968126 (-)	675	WP_012107472.1	type II secretion system F family protein	Machinery gene
MBOO_RS14170 (Mboo_1905)	epdJ	1968178..1968375 (-)	198	WP_012107473.1	hypothetical protein	Machinery gene
MBOO_RS09920 (Mboo_1906)	epdL	1968368..1970617 (-)	2250	WP_012107474.1	type II/IV secretion system ATPase subunit	Machinery gene
MBOO_RS13180 (Mboo_1907)	-	1970948..1971685 (-)	738	WP_012107475.1	roadblock/LC7 domain-containing protein	-
MBOO_RS09930 (Mboo_1908)	-	1971711..1972058 (-)	348	WP_012107476.1	roadblock/LC7 domain-containing protein	-

Sequence

Protein

• Length: 349 a.a.
• Molecular weight: 38069.63 Da
• Isoelectric Point: 8.9221

>NTDB_id=28787 MBOO_RS09910 WP_012107471.1 1966400..1967449(-) (epdK) [Methanoregula boonei 6A8]
MAFNDRLKGILGKEKDPLSQAPPPLSKSEMDSVEKELSDISGRLDTERKSREGIGRFLKHPLKVLVEKPENILIVCVPLS
LIVFVGGFISMVKMYGISVLFNSTVIDDFAVAAVLISIIPVAVLDFREQSRMRNLETALPNFFRDLAGMNDSGMTLPNAV
HLVAGAEYGTLSPHIRKLDNEMSWGVGFVEALYRFGKSLGTPLADRSVDLIAKASKAGGDISEVLRAAANDTFEVVNLAQ
ERRNNMLIYVIIVIVSFTVFLFVIAVLVSSFLSTMATAGTAAQVTAASSKFMGRIDLPAYKRLFSHAAMIQGFFSGLCAG
QMGEGRVIAGLKYSAIMLIVAWVTFRFFI

Nucleotide

• Length: 1050 bp

>NTDB_id=28787 MBOO_RS09910 WP_012107471.1 1966400..1967449(-) (epdK) [Methanoregula boonei 6A8]
ATGGCATTCAACGATAGATTAAAGGGCATTCTTGGAAAAGAAAAAGATCCTCTCTCCCAAGCCCCGCCACCGCTTTCCAA
AAGCGAGATGGATTCCGTGGAAAAGGAACTGAGCGATATTTCCGGCAGGCTGGATACGGAACGCAAGAGCCGGGAAGGGA
TCGGGCGTTTTCTTAAGCACCCGCTCAAGGTGCTCGTGGAAAAGCCCGAGAATATCCTTATTGTCTGCGTCCCCCTGTCA
CTTATCGTTTTTGTTGGTGGATTTATCTCGATGGTGAAGATGTACGGCATCTCCGTGCTCTTCAACTCAACCGTGATTGA
TGATTTTGCCGTTGCGGCGGTGCTCATTTCCATCATCCCGGTGGCAGTCCTCGATTTCCGGGAACAATCACGGATGCGGA
ACCTGGAGACCGCACTCCCCAACTTCTTCCGTGATCTTGCCGGCATGAATGATTCCGGTATGACCCTGCCAAACGCGGTC
CACCTGGTGGCAGGGGCGGAATACGGTACCCTGTCCCCCCATATCAGAAAACTCGATAACGAGATGTCATGGGGAGTCGG
TTTTGTCGAAGCCCTGTACCGGTTTGGGAAAAGCCTGGGGACCCCGCTTGCCGACCGGAGTGTTGACCTGATTGCCAAGG
CAAGCAAGGCCGGCGGGGACATCAGCGAAGTGCTCCGTGCGGCGGCAAACGATACCTTTGAGGTGGTCAATCTTGCCCAG
GAACGCCGGAACAACATGCTGATTTACGTGATCATCGTGATTGTCTCATTTACCGTATTCCTGTTTGTTATCGCGGTGCT
CGTAAGCTCTTTCCTGAGCACCATGGCAACCGCAGGGACGGCCGCCCAAGTAACCGCGGCAAGCAGCAAATTCATGGGAC
GAATTGATCTCCCGGCCTATAAGCGCCTGTTCTCCCATGCGGCTATGATCCAAGGCTTTTTCTCTGGCCTCTGCGCCGGG
CAGATGGGCGAAGGCCGGGTCATTGCCGGGCTCAAATACTCCGCGATCATGCTGATTGTCGCGTGGGTCACCTTCCGGTT
CTTCATCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (142-268)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
epdK	Methanoculleus thermophilus strain DSM 2373	62.258	88.825	0.553