Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MBOO_RS09915 Genome accession   NC_009712
Coordinates   1967452..1968126 (-) Length   224 a.a.
NCBI ID   WP_012107472.1    Uniprot ID   A7I9K8
Organism   Methanoregula boonei 6A8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1962452..1973126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MBOO_RS09890 (Mboo_1899) - 1962853..1964031 (-) 1179 WP_048068436.1 sugar phosphate nucleotidyltransferase -
  MBOO_RS09895 (Mboo_1900) - 1964099..1964365 (+) 267 WP_012107468.1 hypothetical protein -
  MBOO_RS09900 (Mboo_1901) - 1964380..1965822 (-) 1443 WP_012107469.1 cobyric acid synthase -
  MBOO_RS09905 (Mboo_1902) yciH 1965941..1966246 (+) 306 WP_012107470.1 stress response translation initiation inhibitor YciH -
  MBOO_RS09910 (Mboo_1903) epdK 1966400..1967449 (-) 1050 WP_012107471.1 type II secretion system F family protein Machinery gene
  MBOO_RS09915 (Mboo_1904) epdJ 1967452..1968126 (-) 675 WP_012107472.1 type II secretion system F family protein Machinery gene
  MBOO_RS14170 (Mboo_1905) epdJ 1968178..1968375 (-) 198 WP_012107473.1 hypothetical protein Machinery gene
  MBOO_RS09920 (Mboo_1906) epdL 1968368..1970617 (-) 2250 WP_012107474.1 type II/IV secretion system ATPase subunit Machinery gene
  MBOO_RS13180 (Mboo_1907) - 1970948..1971685 (-) 738 WP_012107475.1 roadblock/LC7 domain-containing protein -
  MBOO_RS09930 (Mboo_1908) - 1971711..1972058 (-) 348 WP_012107476.1 roadblock/LC7 domain-containing protein -
  MBOO_RS13185 (Mboo_1909) - 1972324..1973055 (+) 732 WP_012107477.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24692.01 Da        Isoelectric Point: 5.2071

>NTDB_id=28788 MBOO_RS09915 WP_012107472.1 1967452..1968126(-) (epdJ) [Methanoregula boonei 6A8]
MLFLNQYGVLLGTIFVVVFSLLVFGGITYAIFIAYPSVVAGNRRRNIDATLPYAINYITSMSTAGITPAEIFRLLGDSPI
YGESSVEARYIARELDIFGRDLIDALRIVSSSTPSLRMKEFLQGAMASISSGGNLTEYFRTKAAQYALENRQTQKLFLDT
LALISESYVTAMVAGTLFLIILQSIMSVLGGDSKPIFLYVVIYLMIPFGTMMFIIMISSMTPES

Nucleotide


Download         Length: 675 bp        

>NTDB_id=28788 MBOO_RS09915 WP_012107472.1 1967452..1968126(-) (epdJ) [Methanoregula boonei 6A8]
ATGCTTTTCCTCAACCAGTACGGCGTCCTTCTCGGGACTATCTTTGTGGTGGTCTTCTCGCTTCTGGTTTTTGGGGGGAT
CACGTATGCAATTTTTATTGCATATCCTTCTGTTGTCGCCGGGAACCGACGCCGGAATATTGACGCGACCCTGCCCTACG
CGATCAACTACATCACCTCTATGTCCACGGCCGGTATCACACCGGCAGAGATCTTCCGCCTGCTCGGGGACAGCCCGATA
TATGGTGAAAGTTCCGTGGAGGCCCGTTACATAGCCCGGGAGCTCGATATCTTCGGGCGAGACCTTATCGATGCCCTCCG
GATCGTTTCCTCGAGTACACCTTCCCTGCGGATGAAGGAATTCCTGCAGGGTGCAATGGCAAGCATATCGAGCGGGGGAA
ATCTCACCGAGTATTTCCGGACAAAAGCTGCTCAGTATGCCCTGGAGAACCGCCAGACCCAGAAACTCTTCCTGGATACG
CTTGCCCTGATTTCGGAGTCCTACGTGACGGCGATGGTGGCAGGTACGCTCTTTTTGATCATCCTCCAGTCCATCATGTC
GGTGCTGGGTGGGGATTCAAAACCGATATTTCTCTATGTCGTTATCTACCTCATGATTCCCTTCGGTACGATGATGTTTA
TCATCATGATCAGTTCCATGACCCCGGAGTCCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(55-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7I9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

74.091

98.214

0.728

Multiple sequence alignment