Detailed information
Bioinformatically predicted
Overview
| Name | epdJ | Type | Machinery gene |
| Locus tag | MBOO_RS14170 | Genome accession | NC_009712 |
| Coordinates | 1968178..1968375 (-) | Length | 65 a.a. |
| NCBI ID | WP_012107473.1 | Uniprot ID | A7I9K9 |
| Organism | Methanoregula boonei 6A8 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1963178..1973375
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MBOO_RS09895 (Mboo_1900) | - | 1964099..1964365 (+) | 267 | WP_012107468.1 | hypothetical protein | - |
| MBOO_RS09900 (Mboo_1901) | - | 1964380..1965822 (-) | 1443 | WP_012107469.1 | cobyric acid synthase | - |
| MBOO_RS09905 (Mboo_1902) | yciH | 1965941..1966246 (+) | 306 | WP_012107470.1 | stress response translation initiation inhibitor YciH | - |
| MBOO_RS09910 (Mboo_1903) | epdK | 1966400..1967449 (-) | 1050 | WP_012107471.1 | type II secretion system F family protein | Machinery gene |
| MBOO_RS09915 (Mboo_1904) | epdJ | 1967452..1968126 (-) | 675 | WP_012107472.1 | type II secretion system F family protein | Machinery gene |
| MBOO_RS14170 (Mboo_1905) | epdJ | 1968178..1968375 (-) | 198 | WP_012107473.1 | hypothetical protein | Machinery gene |
| MBOO_RS09920 (Mboo_1906) | epdL | 1968368..1970617 (-) | 2250 | WP_012107474.1 | type II/IV secretion system ATPase subunit | Machinery gene |
| MBOO_RS13180 (Mboo_1907) | - | 1970948..1971685 (-) | 738 | WP_012107475.1 | roadblock/LC7 domain-containing protein | - |
| MBOO_RS09930 (Mboo_1908) | - | 1971711..1972058 (-) | 348 | WP_012107476.1 | roadblock/LC7 domain-containing protein | - |
| MBOO_RS13185 (Mboo_1909) | - | 1972324..1973055 (+) | 732 | WP_012107477.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 65 a.a. Molecular weight: 7388.78 Da Isoelectric Point: 10.3157
>NTDB_id=28790 MBOO_RS14170 WP_012107473.1 1968178..1968375(-) (epdJ) [Methanoregula boonei 6A8]
MNSFERFCFNLLGMRMKSKREQYAQLRNDIISARLKTPFEVYISTAVVSSILVGLISAVFLGLIT
MNSFERFCFNLLGMRMKSKREQYAQLRNDIISARLKTPFEVYISTAVVSSILVGLISAVFLGLIT
Nucleotide
Download Length: 198 bp
>NTDB_id=28790 MBOO_RS14170 WP_012107473.1 1968178..1968375(-) (epdJ) [Methanoregula boonei 6A8]
ATGAATAGTTTCGAGCGGTTCTGCTTCAACCTTCTGGGTATGAGGATGAAGTCAAAACGGGAGCAGTACGCCCAGCTCCG
GAACGATATCATCTCGGCCCGGCTCAAGACCCCGTTTGAGGTATATATCTCCACTGCGGTTGTCAGTTCCATCCTTGTTG
GTCTGATTTCGGCGGTCTTCCTGGGTCTTATCACATAG
ATGAATAGTTTCGAGCGGTTCTGCTTCAACCTTCTGGGTATGAGGATGAAGTCAAAACGGGAGCAGTACGCCCAGCTCCG
GAACGATATCATCTCGGCCCGGCTCAAGACCCCGTTTGAGGTATATATCTCCACTGCGGTTGTCAGTTCCATCCTTGTTG
GTCTGATTTCGGCGGTCTTCCTGGGTCTTATCACATAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| epdJ | Methanoculleus thermophilus strain DSM 2373 |
58.462 |
100 |
0.585 |