Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   CDG57_RS15255 Genome accession   NZ_CP028800
Coordinates   3120360..3121487 (+) Length   375 a.a.
NCBI ID   WP_075695884.1    Uniprot ID   A0AAW5RAM0
Organism   Acinetobacter junii strain WCHAJ59     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3115360..3126487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS15235 (CDG57_15225) - 3115919..3118015 (-) 2097 WP_075695883.1 TonB-dependent copper receptor -
  CDG57_RS15240 (CDG57_15230) - 3118089..3118526 (-) 438 WP_004967052.1 DUF2946 family protein -
  CDG57_RS15245 (CDG57_15235) def 3118548..3119078 (-) 531 WP_004905508.1 peptide deformylase -
  CDG57_RS15250 (CDG57_15240) tsaP 3119199..3120350 (+) 1152 WP_004905510.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CDG57_RS15255 (CDG57_15245) dprA 3120360..3121487 (+) 1128 WP_075695884.1 DNA-processing protein DprA Machinery gene
  CDG57_RS15260 (CDG57_15250) - 3121525..3122094 (+) 570 WP_042892180.1 Sua5/YciO/YrdC/YwlC family protein -
  CDG57_RS15265 (CDG57_15255) - 3122537..3123409 (-) 873 WP_087540627.1 DMT family transporter -
  CDG57_RS15270 (CDG57_15260) - 3123513..3124178 (-) 666 WP_171488079.1 TetR/AcrR family transcriptional regulator -
  CDG57_RS15275 (CDG57_15265) - 3124295..3125515 (+) 1221 Protein_2902 MFS transporter -
  CDG57_RS15280 (CDG57_15270) - 3125531..3126304 (+) 774 WP_087540624.1 helix-turn-helix transcriptional regulator -

Sequence


Protein


Download         Length: 375 a.a.        Molecular weight: 42308.27 Da        Isoelectric Point: 7.1915

>NTDB_id=287823 CDG57_RS15255 WP_075695884.1 3120360..3121487(+) (dprA) [Acinetobacter junii strain WCHAJ59]
MLNQLSPRHYHTVLVWYLVQHSLSSFHKILKHFGSCEQATQSHRFSEWYQLGLHANHLKRLEEFQSTQGQKQFEQIVQLI
LKHCDFIVTPHDIDYPKQLIPYADHPPILFGQGHLQALLQPQIALVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLAHG
IDEAAHRGGLAHHRSIAVTGTGLDTVYPTQNKPLAQQIAQSGAIITEFLPTTLPLQQHFPRRNRIVSGLSLGVLVVEAAL
KSGSLITANEAANQGKMVFAIPGHIYSEYHQGCHQLIREGAVLVDHPEQIIEDLALPTHWQTQQHTKDAVEQHSTLPPHL
ISLYQNLDWIGQDLDLLSQRYPAPISEITSQLMELELLGLCIQQGGRYLRCRPIH

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=287823 CDG57_RS15255 WP_075695884.1 3120360..3121487(+) (dprA) [Acinetobacter junii strain WCHAJ59]
ATGTTGAATCAATTATCACCCCGCCACTACCATACCGTGTTGGTGTGGTATTTGGTTCAACACTCCCTATCCAGCTTTCA
CAAAATTCTGAAACATTTTGGGAGTTGTGAACAAGCAACACAAAGCCACCGATTCTCTGAGTGGTATCAACTCGGTTTAC
ATGCAAACCATCTAAAACGTTTAGAAGAATTTCAAAGTACACAAGGTCAAAAACAATTTGAACAGATAGTTCAACTGATT
TTGAAGCACTGTGACTTTATCGTGACGCCACACGATATTGACTATCCCAAACAACTCATACCTTATGCAGACCATCCACC
CATATTATTTGGTCAAGGTCATCTTCAAGCTTTACTGCAACCGCAAATTGCATTGGTGGGGAGCCGCAAACCTAGTCCAC
ATGGTCGCCAAGTGGCTTATGATTTTGCTTATTACCTTAGTGAGAAAGGATTTTATATTACCAGTGGTCTTGCACATGGG
ATTGATGAAGCTGCTCATCGCGGTGGCTTAGCACATCATCGAAGCATCGCTGTCACAGGTACGGGGTTAGATACTGTTTA
TCCAACTCAAAATAAACCATTGGCACAACAAATTGCTCAATCAGGTGCCATCATCACAGAGTTTCTTCCTACGACACTCC
CATTACAACAACATTTTCCACGACGAAATCGGATTGTTAGTGGCTTAAGTTTAGGTGTCTTAGTGGTTGAAGCAGCACTA
AAAAGTGGATCTTTGATTACGGCGAATGAAGCAGCCAATCAAGGTAAAATGGTATTTGCTATCCCTGGTCATATTTACAG
TGAATACCATCAAGGCTGTCATCAACTTATTCGTGAAGGGGCTGTTTTGGTCGATCATCCTGAACAGATTATTGAAGATT
TAGCATTACCTACACATTGGCAGACCCAACAACACACTAAAGATGCTGTAGAACAGCACTCAACACTTCCACCACATTTG
ATTAGCTTGTATCAGAATTTAGATTGGATTGGACAGGATTTAGATTTACTCAGCCAACGCTATCCAGCACCGATCTCTGA
AATCACATCTCAATTAATGGAATTAGAGTTACTAGGTTTGTGCATACAACAAGGTGGTCGCTATTTACGTTGTCGTCCAA
TCCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

72.8

100

0.728

  dprA Acinetobacter baumannii strain A118

71.733

100

0.717

  dprA Acinetobacter baylyi ADP1

69.474

100

0.704

  dprA Vibrio cholerae strain A1552

42.655

94.4

0.403


Multiple sequence alignment