Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AOY78_RS07225 | Genome accession | NZ_CP028750 |
| Coordinates | 1512285..1512791 (-) | Length | 168 a.a. |
| NCBI ID | WP_000168274.1 | Uniprot ID | A0A9X0Q0X8 |
| Organism | Escherichia coli strain A25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1497764..1540383 | 1512285..1512791 | within | 0 |
Gene organization within MGE regions
Location: 1497764..1540383
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AOY78_RS07145 (AOY78_07580) | modC | 1497764..1498822 (+) | 1059 | WP_024242256.1 | molybdenum ABC transporter ATP-binding protein ModC | - |
| AOY78_RS07150 (AOY78_07585) | ybhA | 1498823..1499641 (-) | 819 | WP_001339356.1 | bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase | - |
| AOY78_RS07155 (AOY78_07590) | pgl | 1499796..1500791 (+) | 996 | WP_000815414.1 | 6-phosphogluconolactonase | - |
| AOY78_RS07160 (AOY78_07595) | ybhD | 1500832..1501785 (-) | 954 | WP_000679972.1 | LysR family transcriptional regulator | - |
| AOY78_RS07165 (AOY78_07600) | ybhH | 1501969..1503021 (+) | 1053 | WP_024231748.1 | 4-oxalomesaconate tautomerase | - |
| AOY78_RS07170 (AOY78_07605) | ybhI | 1503097..1504530 (+) | 1434 | WP_001036491.1 | anion permease | - |
| AOY78_RS07175 (AOY78_07610) | ybhJ | 1504713..1506974 (+) | 2262 | WP_096891234.1 | hydratase | - |
| AOY78_RS07180 (AOY78_07615) | ybhC | 1507114..1508397 (-) | 1284 | WP_001091562.1 | putative acyl-CoA thioester hydrolase | - |
| AOY78_RS07185 (AOY78_07620) | - | 1508532..1509602 (-) | 1071 | WP_000533643.1 | tyrosine-type recombinase/integrase | - |
| AOY78_RS07190 (AOY78_07625) | - | 1509580..1509798 (-) | 219 | WP_001303849.1 | excisionase | - |
| AOY78_RS07195 (AOY78_07630) | - | 1509838..1510005 (-) | 168 | WP_000545728.1 | hypothetical protein | - |
| AOY78_RS07200 (AOY78_07635) | - | 1510094..1510375 (-) | 282 | WP_000026224.1 | hypothetical protein | - |
| AOY78_RS07205 (AOY78_07640) | - | 1510578..1511246 (-) | 669 | WP_024248030.1 | ead/Ea22-like family protein | - |
| AOY78_RS07210 (AOY78_07645) | - | 1511243..1511806 (-) | 564 | WP_000827661.1 | hypothetical protein | - |
| AOY78_RS07215 (AOY78_07650) | - | 1511803..1511967 (-) | 165 | WP_001214459.1 | DUF2737 family protein | - |
| AOY78_RS07220 (AOY78_07655) | - | 1511978..1512271 (-) | 294 | WP_001111334.1 | phage anti-RecBCD protein | - |
| AOY78_RS07225 (AOY78_07660) | ssb | 1512285..1512791 (-) | 507 | WP_000168274.1 | single-stranded DNA-binding protein | Machinery gene |
| AOY78_RS07230 (AOY78_07665) | - | 1512792..1513499 (-) | 708 | WP_000365290.1 | Rad52/Rad22 family DNA repair protein | - |
| AOY78_RS07235 (AOY78_07670) | kil | 1513754..1513906 (-) | 153 | WP_001243355.1 | host cell division inhibitory peptide Kil | - |
| AOY78_RS22515 (AOY78_07675) | - | 1513891..1514025 (-) | 135 | WP_000972063.1 | hypothetical protein | - |
| AOY78_RS07240 (AOY78_07680) | - | 1514101..1514469 (-) | 369 | WP_000065364.1 | DUF2528 family protein | - |
| AOY78_RS07245 (AOY78_07685) | - | 1514620..1515090 (-) | 471 | WP_000167595.1 | hypothetical protein | - |
| AOY78_RS07250 (AOY78_07690) | - | 1515159..1515431 (-) | 273 | WP_201488416.1 | antitermination protein N | - |
| AOY78_RS07255 (AOY78_07695) | - | 1515409..1515631 (-) | 223 | Protein_1396 | hypothetical protein | - |
| AOY78_RS07260 (AOY78_07700) | - | 1515870..1516712 (-) | 843 | WP_000032717.1 | BRO family protein | - |
| AOY78_RS07265 (AOY78_07705) | - | 1516793..1517488 (-) | 696 | WP_096246228.1 | LexA family transcriptional regulator | - |
| AOY78_RS07270 (AOY78_07710) | - | 1517564..1517779 (+) | 216 | WP_000067727.1 | helix-turn-helix transcriptional regulator | - |
| AOY78_RS07275 (AOY78_07715) | - | 1517921..1518217 (+) | 297 | WP_000438530.1 | CII family transcriptional regulator | - |
| AOY78_RS07280 (AOY78_07720) | - | 1518250..1519149 (+) | 900 | WP_000185505.1 | replication protein | - |
| AOY78_RS07285 (AOY78_07725) | - | 1519146..1519847 (+) | 702 | WP_000788881.1 | replication protein P | - |
| AOY78_RS07290 (AOY78_07730) | - | 1519844..1520134 (+) | 291 | WP_000145926.1 | protein ren | - |
| AOY78_RS07295 (AOY78_07735) | - | 1520207..1520533 (+) | 327 | WP_000796283.1 | hypothetical protein | - |
| AOY78_RS07300 (AOY78_07740) | - | 1520556..1521002 (+) | 447 | WP_000810177.1 | recombination protein NinB | - |
| AOY78_RS07305 (AOY78_07745) | - | 1520999..1521526 (+) | 528 | WP_201488415.1 | phage N-6-adenine-methyltransferase | - |
| AOY78_RS07310 (AOY78_07750) | - | 1521523..1521705 (+) | 183 | WP_201488414.1 | NinE family protein | - |
| AOY78_RS07315 (AOY78_07755) | - | 1521702..1521872 (+) | 171 | WP_000567007.1 | protein NinF | - |
| AOY78_RS07320 (AOY78_07760) | - | 1521865..1522485 (+) | 621 | WP_024229307.1 | recombination protein NinG | - |
| AOY78_RS07325 (AOY78_07765) | - | 1522482..1523147 (+) | 666 | WP_201488413.1 | serine/threonine protein phosphatase | - |
| AOY78_RS07330 (AOY78_07770) | - | 1523144..1523767 (+) | 624 | WP_201488412.1 | antitermination protein | - |
| AOY78_RS07335 (AOY78_07775) | - | 1524020..1524762 (+) | 743 | Protein_1412 | hypothetical protein | - |
| AOY78_RS07340 (AOY78_07780) | - | 1524848..1525006 (+) | 159 | WP_000499456.1 | DUF3927 family protein | - |
| AOY78_RS07345 | - | 1525087..1525485 (-) | 399 | WP_201488411.1 | hypothetical protein | - |
| AOY78_RS07350 (AOY78_07785) | - | 1525628..1525843 (+) | 216 | WP_000284524.1 | class II holin family protein | - |
| AOY78_RS07355 (AOY78_07790) | - | 1525843..1526340 (+) | 498 | WP_001591713.1 | lysozyme | - |
| AOY78_RS07360 (AOY78_07795) | - | 1526337..1526804 (+) | 468 | WP_001591714.1 | lysis protein | - |
| AOY78_RS07365 (AOY78_07800) | - | 1527003..1527527 (+) | 525 | WP_001059339.1 | Rha family transcriptional regulator | - |
| AOY78_RS07370 (AOY78_07810) | - | 1528073..1528618 (+) | 546 | WP_000453576.1 | DNA-packaging protein | - |
| AOY78_RS07375 (AOY78_07815) | - | 1528593..1528973 (+) | 381 | WP_240764835.1 | hypothetical protein | - |
| AOY78_RS07380 (AOY78_07820) | - | 1528970..1529299 (+) | 330 | WP_000847332.1 | phage tail protein | - |
| AOY78_RS07385 (AOY78_07825) | - | 1529299..1529997 (+) | 699 | WP_001152612.1 | phage minor tail protein L | - |
| AOY78_RS07390 (AOY78_07830) | - | 1530003..1530746 (+) | 744 | WP_000194782.1 | C40 family peptidase | - |
| AOY78_RS07395 (AOY78_07835) | - | 1530743..1531315 (+) | 573 | WP_024227135.1 | tail assembly protein | - |
| AOY78_RS07400 (AOY78_07840) | - | 1531376..1535092 (+) | 3717 | WP_201488479.1 | phage tail protein | - |
| AOY78_RS07405 (AOY78_07845) | - | 1535162..1535761 (+) | 600 | WP_201488480.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| AOY78_RS07410 | - | 1535826..1539152 (+) | 3327 | WP_240764836.1 | prophage tail fiber N-terminal domain-containing protein | - |
| AOY78_RS07415 (AOY78_07865) | - | 1539505..1540383 (+) | 879 | WP_001591744.1 | DUF1653 domain-containing protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18731.03 Da Isoelectric Point: 8.4877
>NTDB_id=287226 AOY78_RS07225 WP_000168274.1 1512285..1512791(-) (ssb) [Escherichia coli strain A25]
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
Nucleotide
Download Length: 507 bp
>NTDB_id=287226 AOY78_RS07225 WP_000168274.1 1512285..1512791(-) (ssb) [Escherichia coli strain A25]
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAAATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.147 |
100 |
0.655 |
| ssb | Glaesserella parasuis strain SC1401 |
45.856 |
100 |
0.494 |
| ssb | Neisseria meningitidis MC58 |
38.636 |
100 |
0.405 |
| ssb | Neisseria gonorrhoeae MS11 |
38.636 |
100 |
0.405 |