Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOY83_RS21940 Genome accession   NZ_CP028745
Coordinates   4637337..4637873 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain A30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4632337..4642873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY83_RS21920 (AOY83_23285) soxR 4634066..4634530 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  AOY83_RS21925 (AOY83_23290) soxS 4634616..4634939 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  AOY83_RS21930 (AOY83_23295) pdeC 4634942..4636528 (-) 1587 WP_096169838.1 c-di-GMP phosphodiesterase PdeC -
  AOY83_RS21935 (AOY83_23305) yjcB 4636957..4637238 (+) 282 WP_001295689.1 YjcB family protein -
  AOY83_RS21940 (AOY83_23310) ssb 4637337..4637873 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AOY83_RS21945 (AOY83_23315) uvrA 4638128..4640950 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  AOY83_RS21950 (AOY83_23320) yjbR 4640985..4641341 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  AOY83_RS21955 (AOY83_23325) yjbQ 4641345..4641761 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AOY83_RS21960 (AOY83_23330) aphA 4641872..4642585 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=287128 AOY83_RS21940 WP_000168305.1 4637337..4637873(-) (ssb) [Escherichia coli strain A30]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=287128 AOY83_RS21940 WP_000168305.1 4637337..4637873(-) (ssb) [Escherichia coli strain A30]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTTGTGGTGAACGTTGG
CGGCACTATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment