Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AOY83_RS02590 Genome accession   NZ_CP028745
Coordinates   540219..541343 (+) Length   374 a.a.
NCBI ID   WP_059321276.1    Uniprot ID   -
Organism   Escherichia coli strain A30     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 535219..546343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY83_RS02565 (AOY83_02700) mscL 535345..535755 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  AOY83_RS02570 (AOY83_02705) trkA 535885..537261 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  AOY83_RS02575 (AOY83_02710) rsmB 537283..538572 (-) 1290 WP_000744779.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AOY83_RS02580 (AOY83_02715) fmt 538618..539565 (-) 948 WP_000004458.1 methionyl-tRNA formyltransferase -
  AOY83_RS02585 (AOY83_02720) def 539580..540089 (-) 510 WP_000114984.1 peptide deformylase -
  AOY83_RS02590 (AOY83_02725) dprA 540219..541343 (+) 1125 WP_059321276.1 DNA-protecting protein DprA Machinery gene
  AOY83_RS02595 (AOY83_02730) smg 541315..541788 (+) 474 WP_000460672.1 DUF494 family protein Smg -
  AOY83_RS02600 (AOY83_02735) yrdD 541817..542359 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  AOY83_RS02605 (AOY83_02740) tsaC 542364..542936 (+) 573 WP_001301437.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  AOY83_RS02610 (AOY83_02745) aroE 542941..543759 (+) 819 WP_240767653.1 shikimate dehydrogenase -
  AOY83_RS02615 (AOY83_02750) yrdB 543756..544013 (+) 258 WP_001070559.1 DUF1488 domain-containing protein -
  AOY83_RS02620 (AOY83_02755) yrdA 543989..544543 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 41022.01 Da        Isoelectric Point: 6.3845

>NTDB_id=287113 AOY83_RS02590 WP_059321276.1 540219..541343(+) (dprA) [Escherichia coli strain A30]
MVDTEIWLRLMSVSSLYGDDMVRIAHWLAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLAKRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=287113 AOY83_RS02590 WP_059321276.1 540219..541343(+) (dprA) [Escherichia coli strain A30]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCGTCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GCTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGAAGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAACGGACTTAATACCATTCATCCCCGCCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCACTTGTCTCGGAATTTCCCCTCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGTTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGACCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481
  dprA Vibrio cholerae strain A1552

44.595

98.93

0.441
  dprA Glaesserella parasuis strain SC1401

45.104

90.107

0.406
  dprA Haemophilus influenzae Rd KW20

44.51

90.107

0.401
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39

Multiple sequence alignment