Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOY85_RS01780 Genome accession   NZ_CP028743
Coordinates   390442..390978 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain A32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 385442..395978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY85_RS01760 (AOY85_01855) aphA 385730..386443 (+) 714 WP_001226933.1 acid phosphatase AphA -
  AOY85_RS01765 (AOY85_01860) yjbQ 386554..386970 (+) 417 WP_000270370.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  AOY85_RS01770 (AOY85_01865) yjbR 386974..387330 (+) 357 WP_033549557.1 MmcQ/YjbR family DNA-binding protein -
  AOY85_RS01775 (AOY85_01870) uvrA 387365..390187 (-) 2823 WP_000357763.1 excinuclease ABC subunit UvrA -
  AOY85_RS01780 (AOY85_01880) ssb 390442..390978 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AOY85_RS01785 (AOY85_01885) yjcB 391077..391358 (-) 282 WP_001295689.1 YjcB family protein -
  AOY85_RS01790 (AOY85_01895) pdeC 391787..393373 (+) 1587 WP_033549559.1 c-di-GMP phosphodiesterase PdeC -
  AOY85_RS01795 (AOY85_01900) soxS 393376..393699 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  AOY85_RS01800 (AOY85_01905) soxR 393785..394249 (+) 465 WP_000412431.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=287067 AOY85_RS01780 WP_000168305.1 390442..390978(+) (ssb) [Escherichia coli strain A32]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=287067 AOY85_RS01780 WP_000168305.1 390442..390978(+) (ssb) [Escherichia coli strain A32]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAATGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment