Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBQ26_RS20795 Genome accession   NZ_CP028574
Coordinates   3993234..3993821 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP005046     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3988234..3998821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBQ26_RS20770 (DBQ26_20785) - 3988310..3989110 (-) 801 WP_017481793.1 SDR family NAD(P)-dependent oxidoreductase -
  DBQ26_RS20775 (DBQ26_20790) - 3989214..3989585 (-) 372 WP_017481792.1 MerR family transcriptional regulator -
  DBQ26_RS20780 (DBQ26_20795) tenA 3989652..3990326 (-) 675 WP_017481791.1 thiaminase II -
  DBQ26_RS20785 (DBQ26_20800) - 3990589..3991671 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  DBQ26_RS20790 (DBQ26_20805) yajR 3991818..3993182 (+) 1365 WP_005078603.1 MFS transporter -
  DBQ26_RS20795 (DBQ26_20810) ssb 3993234..3993821 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  DBQ26_RS20800 (DBQ26_20815) - 3993977..3995203 (+) 1227 WP_107908883.1 site-specific integrase -
  DBQ26_RS20805 (DBQ26_20820) - 3995196..3996752 (+) 1557 WP_107908885.1 site-specific integrase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=285610 DBQ26_RS20795 WP_005066890.1 3993234..3993821(+) (ssb) [Acinetobacter pittii strain WCHAP005046]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=285610 DBQ26_RS20795 WP_005066890.1 3993234..3993821(+) (ssb) [Acinetobacter pittii strain WCHAP005046]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACCGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCACTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACGACAGAAATTCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGTAACCCTCAAGCGGGTGGTTTCGCGCCTAAAGCTCCGCAACAACCGGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment