Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CDG55_RS14230 Genome accession   NZ_CP028561
Coordinates   2672063..2673193 (+) Length   376 a.a.
NCBI ID   WP_087536723.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHA45     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2667063..2678193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS14210 (CDG55_14200) - 2667622..2669712 (-) 2091 WP_087536724.1 TonB-dependent copper receptor -
  CDG55_RS14215 (CDG55_14205) - 2669786..2670196 (-) 411 WP_087536731.1 DUF2946 family protein -
  CDG55_RS14220 (CDG55_14210) def 2670247..2670777 (-) 531 WP_004680037.1 peptide deformylase -
  CDG55_RS14225 (CDG55_14215) tsaP 2670898..2672049 (+) 1152 WP_005155273.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CDG55_RS14230 (CDG55_14220) dprA 2672063..2673193 (+) 1131 WP_087536723.1 DNA-processing protein DprA Machinery gene
  CDG55_RS14235 (CDG55_14225) - 2673227..2673796 (+) 570 WP_087536722.1 Sua5/YciO/YrdC/YwlC family protein -
  CDG55_RS14240 (CDG55_14230) - 2674200..2675108 (-) 909 WP_087536721.1 DMT family transporter -
  CDG55_RS15565 (CDG55_14235) - 2675245..2675373 (+) 129 Protein_2497 MFS transporter -
  CDG55_RS14250 (CDG55_14240) - 2675387..2676159 (+) 773 Protein_2498 AraC family transcriptional regulator -
  CDG55_RS14255 (CDG55_14245) - 2676276..2676821 (+) 546 WP_087536720.1 glutathione peroxidase -
  CDG55_RS14260 (CDG55_14250) - 2677000..2677602 (+) 603 WP_087536719.1 hypothetical protein -
  CDG55_RS14265 (CDG55_14255) - 2677678..2678097 (-) 420 WP_004665198.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 42429.39 Da        Isoelectric Point: 6.7370

>NTDB_id=285532 CDG55_RS14230 WP_087536723.1 2672063..2673193(+) (dprA) [Acinetobacter sp. WCHA45]
MLNQLSPHHYHTVLVWYLVQHSLSSFQKIRNYFGNCAEAVQTHRLSEWQQLGLHKNHLKRLEEFQTPHGKQQFDHMVQLI
CKHTDFILTPEDIDYPTQLLPYSDHPPILFGQGQLQALLQPQIAMVGSRKPSPHGRQVAYDFAYYLSEKGFYISSGLAHG
IDEAAHRGGLAHHRTIAVTGTGLDTVYPSQNNKLAQEIIQTGALVTEFLPTTLPLQQHFPRRNRIVSGLSLGVLVVEAAL
KSGSLITANEAANQGKMVFAIPGHIYSEYHQGCHQLIREGATLVDHPEQIIEDLALPTQWQVQQQIPEEHVTITPSLPTH
LIALYQSLDWVGQDLDELAQRHPIPIAELTAQLMELELLGFCIQQGGRYLRCRPIH

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=285532 CDG55_RS14230 WP_087536723.1 2672063..2673193(+) (dprA) [Acinetobacter sp. WCHA45]
ATGTTGAATCAGCTATCGCCCCATCATTATCATACTGTGTTGGTGTGGTACTTGGTTCAACACTCGCTTTCTAGTTTTCA
AAAAATTCGAAACTATTTCGGTAATTGTGCGGAAGCAGTCCAAACACATCGACTTTCTGAATGGCAACAGCTCGGTTTAC
ACAAAAATCATTTAAAACGTCTAGAAGAATTCCAAACCCCGCACGGAAAGCAGCAATTTGACCACATGGTGCAATTGATT
TGTAAGCATACCGATTTTATTTTAACCCCTGAAGATATCGACTACCCTACTCAACTTTTACCTTATTCTGATCACCCTCC
TATTTTATTTGGTCAAGGCCAGCTACAAGCATTATTACAGCCCCAGATTGCTATGGTTGGAAGTCGAAAGCCGAGTCCTC
ATGGACGACAAGTTGCCTATGATTTTGCGTATTATTTAAGTGAAAAAGGATTTTACATCAGCAGCGGTTTAGCCCACGGA
ATTGATGAAGCGGCTCATCGTGGCGGTTTAGCCCATCATCGGACAATCGCGGTGACTGGAACAGGTTTAGACACAGTTTA
TCCATCGCAAAATAACAAACTAGCCCAAGAAATTATTCAAACAGGCGCTCTTGTCACTGAGTTTCTTCCGACTACCCTAC
CTTTACAGCAGCATTTTCCACGCCGTAATCGTATCGTTAGTGGTCTAAGTCTTGGGGTTTTGGTTGTAGAAGCCGCTTTG
AAAAGTGGTTCACTGATCACAGCAAATGAAGCAGCCAATCAAGGGAAAATGGTATTTGCCATTCCTGGACATATTTACAG
TGAGTATCATCAAGGCTGTCATCAATTAATTCGTGAAGGTGCAACTTTAGTTGATCATCCAGAACAAATTATTGAAGATC
TAGCCTTACCTACACAATGGCAAGTACAACAACAAATTCCAGAAGAACATGTAACCATCACACCAAGCTTACCAACACAT
TTGATTGCTCTTTATCAAAGTCTCGACTGGGTTGGACAAGACTTGGATGAACTTGCTCAACGTCATCCAATTCCGATCGC
AGAACTTACAGCTCAATTGATGGAATTAGAATTACTTGGTTTCTGTATACAACAGGGCGGTCGCTATTTACGTTGTCGTC
CAATTCATTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(323-367)

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

74.4

99.734

0.742
  dprA Acinetobacter baumannii strain A118

74.133

99.734

0.739
  dprA Acinetobacter baylyi ADP1

70.526

100

0.713
  dprA Vibrio cholerae strain A1552

42.73

89.628

0.383

Multiple sequence alignment