Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CDG55_RS03820 Genome accession   NZ_CP028561
Coordinates   519242..519670 (+) Length   142 a.a.
NCBI ID   WP_087536599.1    Uniprot ID   -
Organism   Acinetobacter sp. WCHA45     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514242..524670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG55_RS03795 (CDG55_03795) lpoB 514971..515573 (-) 603 WP_005164332.1 penicillin-binding protein activator LpoB -
  CDG55_RS03800 (CDG55_03800) - 515602..516009 (-) 408 WP_087536595.1 DUF1425 domain-containing protein -
  CDG55_RS03805 (CDG55_03805) - 516028..517398 (-) 1371 WP_087536596.1 COG3014 family protein -
  CDG55_RS03810 (CDG55_03810) - 517600..518373 (-) 774 WP_087536597.1 SDR family oxidoreductase -
  CDG55_RS03815 (CDG55_03815) mazG 518467..519273 (+) 807 WP_087536598.1 nucleoside triphosphate pyrophosphohydrolase -
  CDG55_RS03820 (CDG55_03820) comEA 519242..519670 (+) 429 WP_087536599.1 ComEA family DNA-binding protein Machinery gene
  CDG55_RS03825 (CDG55_03825) pcnB 519810..521264 (+) 1455 WP_005214590.1 polynucleotide adenylyltransferase PcnB -
  CDG55_RS03830 (CDG55_03830) folK 521261..521749 (+) 489 WP_005164362.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CDG55_RS03835 (CDG55_03835) panB 521789..522598 (+) 810 WP_004664191.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  CDG55_RS03840 (CDG55_03840) panC 522602..523447 (+) 846 WP_087536600.1 pantoate--beta-alanine ligase -
  CDG55_RS03845 (CDG55_03845) rapZ 523471..524322 (+) 852 WP_004664195.1 RNase adapter RapZ -
  CDG55_RS03850 (CDG55_03850) - 524319..524588 (+) 270 WP_004664196.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16157.43 Da        Isoelectric Point: 10.4699

>NTDB_id=285508 CDG55_RS03820 WP_087536599.1 519242..519670(+) (comEA) [Acinetobacter sp. WCHA45]
MNLPQPRSKHNFILFIFIFLSCFVYVSAQPFDQSYEKWKAQQQARDQQLAKQPNNNYYLSRPTPQKSSQQVSSSTNIQGD
KISLNQANLQQLQTLNGVGEKKAQAIVEYRQKNGGFKTVDELVNVKGIGPKLLEKNKARLAL

Nucleotide


Download         Length: 429 bp        

>NTDB_id=285508 CDG55_RS03820 WP_087536599.1 519242..519670(+) (comEA) [Acinetobacter sp. WCHA45]
ATGAATTTGCCGCAACCACGCAGCAAACATAACTTTATTCTGTTTATTTTTATATTTTTAAGCTGCTTTGTTTATGTAAG
TGCACAGCCATTCGATCAATCCTATGAAAAATGGAAAGCTCAACAACAAGCACGTGATCAGCAATTAGCGAAGCAGCCTA
ACAATAATTATTATTTATCAAGACCTACGCCACAGAAGAGTTCTCAGCAAGTTTCATCTTCTACCAATATTCAGGGCGAT
AAGATTAGTTTGAACCAAGCAAATTTACAGCAGTTACAGACTTTAAATGGTGTTGGTGAGAAAAAGGCTCAGGCAATTGT
TGAATATCGCCAAAAGAATGGTGGTTTTAAAACGGTGGATGAGTTGGTCAATGTAAAAGGAATTGGTCCAAAATTGCTTG
AGAAAAATAAAGCACGCTTAGCATTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(80-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

51.111

95.07

0.486
  comEA Acinetobacter baumannii D1279779

49.618

92.254

0.458
  comEA Acinetobacter baylyi ADP1

46.324

95.775

0.444

Multiple sequence alignment