Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CDG55_RS02000 | Genome accession | NZ_CP028561 |
| Coordinates | 170871..171455 (+) | Length | 194 a.a. |
| NCBI ID | WP_005156773.1 | Uniprot ID | A0A7Y8Q7D8 |
| Organism | Acinetobacter sp. WCHA45 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 170871..205707 | 170871..171455 | within | 0 |
Gene organization within MGE regions
Location: 170871..205707
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDG55_RS02000 (CDG55_02000) | ssb | 170871..171455 (+) | 585 | WP_005156773.1 | single-stranded DNA-binding protein | Machinery gene |
| CDG55_RS02005 (CDG55_02005) | - | 171749..172609 (+) | 861 | WP_087537026.1 | pirin family protein | - |
| CDG55_RS02010 (CDG55_02010) | - | 173046..174344 (+) | 1299 | WP_087537025.1 | FAD-dependent oxidoreductase | - |
| CDG55_RS02015 (CDG55_02015) | - | 174347..175174 (+) | 828 | WP_087537024.1 | SAM-dependent methyltransferase | - |
| CDG55_RS02030 (CDG55_02030) | - | 176010..176270 (-) | 261 | WP_087537022.1 | helix-turn-helix domain-containing protein | - |
| CDG55_RS02035 (CDG55_02035) | fic | 176404..177519 (-) | 1116 | WP_087537021.1 | protein adenylyltransferase Fic | - |
| CDG55_RS02040 (CDG55_02040) | - | 177886..180639 (+) | 2754 | WP_162620825.1 | hypothetical protein | - |
| CDG55_RS02050 (CDG55_02050) | - | 181414..182322 (+) | 909 | WP_087537019.1 | YagK/YfjJ domain-containing protein | - |
| CDG55_RS02055 (CDG55_02055) | - | 182423..182695 (+) | 273 | WP_087537018.1 | hypothetical protein | - |
| CDG55_RS02060 (CDG55_02060) | - | 182750..183193 (-) | 444 | WP_087537522.1 | hypothetical protein | - |
| CDG55_RS02065 (CDG55_02065) | - | 183252..184079 (-) | 828 | WP_087537521.1 | hypothetical protein | - |
| CDG55_RS02070 (CDG55_02070) | - | 184148..184675 (-) | 528 | WP_087537520.1 | DUF1566 domain-containing protein | - |
| CDG55_RS02075 (CDG55_02075) | - | 184709..185755 (-) | 1047 | WP_111313901.1 | DUF1566 domain-containing protein | - |
| CDG55_RS02080 (CDG55_02080) | - | 186224..187294 (+) | 1071 | WP_111313902.1 | DUF932 domain-containing protein | - |
| CDG55_RS02085 (CDG55_02085) | - | 187398..188510 (+) | 1113 | WP_087535919.1 | YqaJ viral recombinase family protein | - |
| CDG55_RS02090 (CDG55_02090) | - | 188682..189578 (+) | 897 | WP_087535920.1 | hydrolase or metal-binding protein | - |
| CDG55_RS02095 (CDG55_02095) | - | 189655..189888 (+) | 234 | WP_087535921.1 | helix-turn-helix transcriptional regulator | - |
| CDG55_RS02100 (CDG55_02100) | - | 189951..190538 (+) | 588 | WP_087535922.1 | class I SAM-dependent methyltransferase | - |
| CDG55_RS02105 (CDG55_02105) | - | 190546..191559 (+) | 1014 | WP_087535923.1 | HNH endonuclease signature motif containing protein | - |
| CDG55_RS02110 (CDG55_02110) | - | 191564..193474 (-) | 1911 | WP_087535924.1 | hypothetical protein | - |
| CDG55_RS02115 (CDG55_02115) | acpS | 193562..193954 (-) | 393 | WP_087535925.1 | holo-ACP synthase | - |
| CDG55_RS02120 (CDG55_02120) | - | 193981..195093 (-) | 1113 | WP_228252563.1 | nucleotide kinase domain-containing protein | - |
| CDG55_RS02125 (CDG55_02125) | - | 195141..195926 (-) | 786 | WP_087535926.1 | thymidylate synthase | - |
| CDG55_RS02130 (CDG55_02130) | - | 195919..196791 (-) | 873 | WP_087535927.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDG55_RS02135 (CDG55_02135) | - | 196807..197157 (-) | 351 | WP_087535928.1 | helix-turn-helix domain-containing protein | - |
| CDG55_RS02140 (CDG55_02140) | - | 197157..197468 (-) | 312 | WP_087535929.1 | hypothetical protein | - |
| CDG55_RS02145 (CDG55_02145) | - | 197660..198979 (+) | 1320 | WP_087535930.1 | hypothetical protein | - |
| CDG55_RS02150 (CDG55_02150) | - | 198979..199698 (+) | 720 | WP_087535931.1 | dCTP deaminase domain-containing protein | - |
| CDG55_RS02155 (CDG55_02155) | - | 199695..200312 (-) | 618 | WP_087535932.1 | hypothetical protein | - |
| CDG55_RS02160 (CDG55_02160) | - | 200316..200768 (-) | 453 | WP_087535933.1 | TIR domain-containing protein | - |
| CDG55_RS02165 (CDG55_02165) | - | 201092..202251 (+) | 1160 | WP_087535934.1 | IS3 family transposase | - |
| CDG55_RS15445 (CDG55_02175) | - | 202462..204492 (+) | 2031 | WP_111313903.1 | TIR domain-containing protein | - |
| CDG55_RS02180 (CDG55_02180) | - | 204544..205707 (-) | 1164 | WP_087535936.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21309.01 Da Isoelectric Point: 6.4819
>NTDB_id=285498 CDG55_RS02000 WP_005156773.1 170871..171455(+) (ssb) [Acinetobacter sp. WCHA45]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDTRQQSEQGGGDFNQPRFNNNNNQGGGYQNTGYNNNQNGYGQGGGFAGGNQG
NYAGSPQAGNGFNTPKSAPQPATAPADLDDDLPF
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDTRQQSEQGGGDFNQPRFNNNNNQGGGYQNTGYNNNQNGYGQGGGFAGGNQG
NYAGSPQAGNGFNTPKSAPQPATAPADLDDDLPF
Nucleotide
Download Length: 585 bp
>NTDB_id=285498 CDG55_RS02000 WP_005156773.1 170871..171455(+) (ssb) [Acinetobacter sp. WCHA45]
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTGGGTAAAGATCCTGAAACCAAAACTTTTCCAAATGGTGGATC
CCTGACTCAATTTTCGATTGCAACAAGTGAGTCTTGGACAGATAAGAATACAGGCGAGCGTAAAGAACAAACAGAATGGC
ATCGTATTGTGTTACACAACCGTTTAGGCGAAATTGCACAGCAATATTTGCGTAAAGGTTCAAAAGTTTATATCGAAGGT
TCATTACGTACTCGTCAATGGACAGATCAAAACGGTCAAGAGCGTTACAGTACTGAAATTCGTGGCGATCAAATGCAAAT
GTTAGATACGCGTCAACAAAGCGAACAAGGCGGCGGTGACTTTAATCAACCACGTTTTAATAACAACAATAACCAAGGTG
GTGGTTACCAAAATACGGGTTATAACAACAACCAAAATGGTTATGGTCAGGGCGGAGGTTTTGCTGGCGGTAATCAAGGT
AATTATGCTGGTAGTCCACAAGCAGGAAATGGTTTTAATACACCAAAATCAGCACCTCAGCCTGCGACTGCCCCTGCTGA
TTTAGATGATGATTTACCATTTTAG
ATGCGTGGTGTGAATAAAGTTATTTTAGTAGGTACTTTGGGTAAAGATCCTGAAACCAAAACTTTTCCAAATGGTGGATC
CCTGACTCAATTTTCGATTGCAACAAGTGAGTCTTGGACAGATAAGAATACAGGCGAGCGTAAAGAACAAACAGAATGGC
ATCGTATTGTGTTACACAACCGTTTAGGCGAAATTGCACAGCAATATTTGCGTAAAGGTTCAAAAGTTTATATCGAAGGT
TCATTACGTACTCGTCAATGGACAGATCAAAACGGTCAAGAGCGTTACAGTACTGAAATTCGTGGCGATCAAATGCAAAT
GTTAGATACGCGTCAACAAAGCGAACAAGGCGGCGGTGACTTTAATCAACCACGTTTTAATAACAACAATAACCAAGGTG
GTGGTTACCAAAATACGGGTTATAACAACAACCAAAATGGTTATGGTCAGGGCGGAGGTTTTGCTGGCGGTAATCAAGGT
AATTATGCTGGTAGTCCACAAGCAGGAAATGGTTTTAATACACCAAAATCAGCACCTCAGCCTGCGACTGCCCCTGCTGA
TTTAGATGATGATTTACCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
50.246 |
100 |
0.526 |
| ssb | Vibrio cholerae strain A1552 |
45.729 |
100 |
0.469 |
| ssb | Neisseria gonorrhoeae MS11 |
39.062 |
98.969 |
0.387 |
| ssb | Neisseria meningitidis MC58 |
39.062 |
98.969 |
0.387 |