Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FORC085_RS27140 Genome accession   NZ_CP028516
Coordinates   5316377..5316889 (-) Length   170 a.a.
NCBI ID   WP_065223202.1    Uniprot ID   -
Organism   Bacillus cereus strain 1000305     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5311377..5321889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC085_RS27120 (FORC085_5429) rplI 5312587..5313033 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  FORC085_RS27125 (FORC085_5430) - 5313030..5315003 (-) 1974 WP_001113785.1 DHH family phosphoesterase -
  FORC085_RS27130 (FORC085_5431) - 5315082..5316017 (-) 936 WP_135811617.1 YybS family protein -
  FORC085_RS27135 (FORC085_5432) rpsR 5316098..5316331 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  FORC085_RS27140 (FORC085_5433) ssbA 5316377..5316889 (-) 513 WP_065223202.1 single-stranded DNA-binding protein Machinery gene
  FORC085_RS27145 (FORC085_5434) rpsF 5316916..5317206 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  FORC085_RS27150 (FORC085_5435) ychF 5317398..5318498 (-) 1101 WP_000524657.1 redox-regulated ATPase YchF -
  FORC085_RS27155 (FORC085_5436) - 5318614..5318811 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  FORC085_RS27160 (FORC085_5437) - 5318832..5319713 (-) 882 WP_000364814.1 mechanosensitive ion channel family protein -
  FORC085_RS27165 (FORC085_5438) yyaC 5319973..5320569 (+) 597 WP_135811618.1 spore protease YyaC -
  FORC085_RS27170 (FORC085_5439) spo0J 5320590..5321441 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18504.33 Da        Isoelectric Point: 4.9327

>NTDB_id=285383 FORC085_RS27140 WP_065223202.1 5316377..5316889(-) (ssbA) [Bacillus cereus strain 1000305]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNPGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=285383 FORC085_RS27140 WP_065223202.1 5316377..5316889(-) (ssbA) [Bacillus cereus strain 1000305]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATCCAGGTAACCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72.571

100

0.747
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.43

100

0.394

Multiple sequence alignment