Detailed information NTG0285303

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DA456_RS14800
• Genome accession: NZ_CP028490
• Coordinates: 3409965..3410837 (+)
• Length: 290 a.a.
• NCBI ID: WP_029572867.1
• Uniprot ID: A0AAD0IBI3
• Organism: Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group)
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3404965..3415837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DA456_RS14780 (DA456_14780)	-	3405684..3406229 (+)	546	WP_003345116.1	DUF1523 family protein	-
DA456_RS14785 (DA456_14785)	-	3406404..3406823 (-)	420	WP_016567160.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
DA456_RS14790 (DA456_14790)	pilB	3407049..3408743 (+)	1695	WP_003345119.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DA456_RS14795 (DA456_14795)	pilC	3408746..3409963 (+)	1218	WP_011266635.1	type II secretion system F family protein	Machinery gene
DA456_RS14800 (DA456_14800)	pilD	3409965..3410837 (+)	873	WP_029572867.1	A24 family peptidase	Machinery gene
DA456_RS14805 (DA456_14805)	coaE	3410834..3411457 (+)	624	WP_029572866.1	dephospho-CoA kinase	-
DA456_RS14810 (DA456_14810)	yacG	3411454..3411663 (+)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
DA456_RS14815 (DA456_14815)	-	3411790..3412251 (-)	462	WP_029573726.1	hypothetical protein	-
DA456_RS14820 (DA456_14820)	-	3412378..3413007 (+)	630	WP_003392710.1	DUF1780 domain-containing protein	-
DA456_RS14825 (DA456_14825)	-	3413004..3413537 (+)	534	WP_003317783.1	MOSC domain-containing protein	-
DA456_RS14835 (DA456_14835)	-	3413754..3415052 (+)	1299	WP_029573509.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32005.24 Da
• Isoelectric Point: 8.3734

>NTDB_id=285303 DA456_RS14800 WP_029572867.1 3409965..3410837(+) (pilD) [Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group)]
MPLLDLLASSPLAFVITCCILGLIIGSFLNVIVYRLPIMMERDWKAQSRELLGLPAEPDQPVFNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLGWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=285303 DA456_RS14800 WP_029572867.1 3409965..3410837(+) (pilD) [Pseudomonas syringae pv. atrofaciens strain LMG5095 isolate Triticum aestivum (Aestivum Group)]
ATGCCCCTCCTCGACCTCCTGGCCAGCTCCCCCCTGGCCTTCGTCATCACCTGCTGCATCCTCGGCCTGATCATCGGAAG
CTTCCTCAACGTGATCGTCTATCGCCTGCCAATAATGATGGAGCGCGACTGGAAAGCCCAATCCCGTGAACTGCTCGGCC
TGCCCGCCGAACCCGATCAGCCCGTCTTCAACCTAAACCGCCCCCGTTCAAGCTGCCCGCATTGCGCACACAAAATCCGC
CCATGGGAAAACCTGCCGGTGATCAGCTATCTGCTGCTGCGCGGCAAATGCTCGCAGTGCAAAGCGCCGATCAGCAAACG
CTACCCGTTGGTGGAGCTGACCTGCGCAGTGTTGTCGGCCTACGTGGCTTGGCATTTCGGCTTTGGTTGGCAGGCGGCGG
CGATGCTGGTATTGGGCTGGGGGCTGCTGGCGATGAGTCTGATCGATGCTGATCACCAGTTGTTACCTGATTCTCTGGTG
CTGCCACTGCTGTGGCTAGGCCTCATAGTCAACGCTTTCGGGCTGTTCACATCGCTGAACGATGCGCTTTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTTACAGGCAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTGGGCGCGTGGGGCGGCTGGCAGATTTTGCCGCTGACCATCCTGTTATCGTCGCTGGTGGGC
GCGGTGCTTGGGGTGATCATGATGCGTGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	97.931	0.514
pilD	Vibrio campbellii strain DS40M4	51.943	97.586	0.507
pilD	Acinetobacter baumannii D1279779	52.555	94.483	0.497
pilD	Acinetobacter nosocomialis M2	51.825	94.483	0.49
pilD	Neisseria gonorrhoeae MS11	51.119	92.414	0.472