Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ASUC_RS02960 Genome accession   NC_009655
Coordinates   627828..628958 (+) Length   376 a.a.
NCBI ID   WP_012072321.1    Uniprot ID   A6VLU4
Organism   Actinobacillus succinogenes 130Z     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 622828..633958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASUC_RS02930 (Asuc_0560) - 623172..623363 (-) 192 WP_012072315.1 membrane lipoprotein lipid attachment site-containing protein -
  ASUC_RS02935 (Asuc_0561) - 623374..623949 (-) 576 WP_012072316.1 YqaA family protein -
  ASUC_RS02940 (Asuc_0562) surE 623990..624730 (-) 741 WP_012072317.1 5'/3'-nucleotidase SurE -
  ASUC_RS02945 (Asuc_0563) ilvC 624817..626298 (-) 1482 WP_012072318.1 ketol-acid reductoisomerase -
  ASUC_RS02950 (Asuc_0564) - 626418..626810 (+) 393 WP_012072319.1 VOC family protein -
  ASUC_RS02955 (Asuc_0565) ilvY 626820..627700 (+) 881 Protein_567 HTH-type transcriptional activator IlvY -
  ASUC_RS02960 (Asuc_0566) dprA 627828..628958 (+) 1131 WP_012072321.1 DNA-processing protein DprA Machinery gene
  ASUC_RS02965 (Asuc_0567) pflA 629120..629857 (+) 738 WP_012072322.1 pyruvate formate lyase 1-activating protein -
  ASUC_RS02970 (Asuc_0568) - 630071..630703 (+) 633 WP_012072323.1 tellurite resistance TerB family protein -
  ASUC_RS02975 (Asuc_0569) - 630827..631333 (-) 507 WP_012072324.1 DUF2301 domain-containing membrane protein -
  ASUC_RS02980 (Asuc_0570) - 631363..632247 (-) 885 WP_012072325.1 divergent polysaccharide deacetylase family protein -
  ASUC_RS02985 (Asuc_0571) envC 632247..633464 (-) 1218 WP_012072326.1 murein hydrolase activator EnvC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41863.03 Da        Isoelectric Point: 6.6866

>NTDB_id=28515 ASUC_RS02960 WP_012072321.1 627828..628958(+) (dprA) [Actinobacillus succinogenes 130Z]
MDKYTETLLRLLQVPRLGANTVSQILTTIELNTLLSYDADAFYAIGWTTYQIKRWFKPERKYIDPALEWGQKRGNQIIHC
FHLDYPYLLKQIESSPPVLFVQGNTGLLIHPQIAIVGSRYCSDYGSYWAKYFAAELCAAGFAVTSGLAKGIDAYSHQAAL
DVQGKTVAVLGNGLNQIYPAVNRKLAQAILDNDGTLVTEFIPDQPPLPANFPRRNRIISGLSLATLVVEASARSGSLITA
RFALEQNREVFAIPGNLNNDFSRGCHKLIKQGAMLVENAKDVIENIPYYGFTNMQLRDVKDVLKATVPCPNPRPPSARHP
DPQHPDLFKLIGHDLISVDELATQTGLGVEALLIQLLDLELQDLILCEDGGYRRQW

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=28515 ASUC_RS02960 WP_012072321.1 627828..628958(+) (dprA) [Actinobacillus succinogenes 130Z]
ATGGATAAATATACGGAAACCTTATTGCGCTTATTGCAAGTTCCCCGGCTGGGCGCGAACACCGTCAGTCAGATTCTCAC
CACCATCGAGTTAAACACCCTGCTGTCTTACGATGCCGACGCCTTTTACGCCATCGGTTGGACGACATATCAGATCAAAC
GTTGGTTTAAGCCGGAACGTAAATATATCGATCCCGCACTGGAATGGGGACAAAAACGCGGTAATCAGATTATCCATTGT
TTCCATTTGGACTATCCTTATTTACTTAAGCAAATTGAAAGTTCGCCGCCCGTACTGTTTGTACAGGGGAACACGGGGTT
GTTAATTCATCCGCAAATCGCTATCGTCGGTAGTCGTTATTGCAGCGATTACGGCAGTTATTGGGCAAAATACTTTGCGG
CGGAATTGTGTGCCGCCGGTTTTGCCGTCACCAGCGGGTTGGCTAAAGGGATTGACGCCTACAGTCATCAGGCGGCGCTG
GATGTACAGGGTAAAACCGTTGCAGTGTTAGGAAACGGATTAAACCAAATTTATCCGGCCGTTAACCGAAAGCTTGCGCA
AGCGATTTTGGATAACGATGGAACGTTGGTAACGGAATTTATTCCCGATCAACCGCCGCTTCCCGCCAATTTCCCCCGCC
GTAACCGAATAATCAGCGGATTGTCTCTGGCAACGCTGGTCGTGGAAGCATCCGCACGCAGCGGTTCGCTGATTACTGCG
CGTTTTGCTTTGGAACAAAACCGCGAGGTGTTCGCTATTCCGGGTAATCTCAACAACGATTTCAGCAGAGGGTGCCATAA
ATTGATCAAGCAGGGGGCAATGCTGGTGGAAAATGCTAAAGACGTTATTGAAAATATTCCCTATTACGGTTTTACCAATA
TGCAGCTTCGGGATGTGAAAGATGTACTGAAAGCGACCGTACCCTGTCCGAACCCGCGACCGCCTTCCGCTCGTCATCCG
GATCCGCAGCATCCCGATTTATTCAAACTGATCGGACATGATTTGATCAGCGTGGACGAATTGGCGACGCAAACGGGATT
AGGCGTAGAAGCGCTTCTGATTCAGCTACTGGATCTTGAATTGCAGGATTTAATTTTGTGCGAAGACGGCGGATATCGTC
GTCAGTGGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)

DprA winged helix domain (DprA_WH)

(312-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6VLU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Haemophilus influenzae Rd KW20

56.383

100

0.564
  dprA Glaesserella parasuis strain SC1401

51.081

98.404

0.503
  dprA Vibrio cholerae strain A1552

40.789

100

0.412
  dprA Vibrio campbellii strain DS40M4

40.761

97.872

0.399
  dprA Legionella pneumophila strain ERS1305867

38.624

100

0.388

Multiple sequence alignment