Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DA379_RS17190 Genome accession   NZ_CP028441
Coordinates   3440988..3441506 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain 131-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3435988..3446506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA379_RS17160 - 3437184..3437564 (-) 381 WP_004392999.1 VOC family protein -
  DA379_RS17165 - 3437621..3438559 (-) 939 WP_004392996.1 LacI family DNA-binding transcriptional regulator -
  DA379_RS17170 xth 3438622..3439380 (-) 759 WP_004392994.1 exodeoxyribonuclease III -
  DA379_RS17175 - 3439377..3439934 (-) 558 WP_004392989.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  DA379_RS17180 - 3439931..3440512 (-) 582 WP_004392986.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  DA379_RS17185 rpsR 3440705..3440944 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  DA379_RS17190 ssbA 3440988..3441506 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  DA379_RS17195 rpsF 3441546..3441833 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  DA379_RS17200 ychF 3441945..3443045 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  DA379_RS17205 - 3443172..3445175 (-) 2004 WP_004392974.1 molybdopterin-dependent oxidoreductase -
  DA379_RS17210 - 3445222..3445428 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=285110 DA379_RS17190 WP_004392979.1 3440988..3441506(-) (ssbA) [Bacillus velezensis strain 131-4]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=285110 DA379_RS17190 WP_004392979.1 3440988..3441506(-) (ssbA) [Bacillus velezensis strain 131-4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGTTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment