Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EGX82_RS10950 Genome accession   NZ_CP033822
Coordinates   2093076..2093756 (+) Length   226 a.a.
NCBI ID   WP_000274751.1    Uniprot ID   Q3K0Z6
Organism   Streptococcus agalactiae strain FDAARGOS_512     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2088076..2098756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX82_RS10930 (EGX82_10930) - 2088621..2089442 (+) 822 WP_000593347.1 Cof-type HAD-IIB family hydrolase -
  EGX82_RS10935 (EGX82_10935) - 2089543..2090157 (+) 615 WP_000895129.1 SGNH/GDSL hydrolase family protein -
  EGX82_RS10940 (EGX82_10940) - 2090317..2091756 (+) 1440 WP_000989488.1 6-phospho-beta-glucosidase -
  EGX82_RS10945 (EGX82_10945) - 2091847..2092980 (+) 1134 WP_000667240.1 AI-2E family transporter -
  EGX82_RS10950 (EGX82_10950) radC 2093076..2093756 (+) 681 WP_000274751.1 DNA repair protein RadC Machinery gene
  EGX82_RS10955 (EGX82_10955) - 2093769..2094407 (-) 639 WP_000605175.1 redox-sensing transcriptional repressor Rex -
  EGX82_RS10960 (EGX82_10960) - 2094562..2094909 (-) 348 WP_000863499.1 DUF1831 domain-containing protein -
  EGX82_RS10965 (EGX82_10965) - 2094911..2096026 (-) 1116 WP_000639602.1 cysteine desulfurase family protein -
  EGX82_RS10970 (EGX82_10970) - 2096030..2097004 (-) 975 WP_000840698.1 ribose-phosphate diphosphokinase -
  EGX82_RS10975 (EGX82_10975) - 2097181..2097753 (-) 573 WP_000149079.1 CYTH domain-containing protein -
  EGX82_RS10980 (EGX82_10980) - 2097863..2098534 (+) 672 WP_000061344.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25841.15 Da        Isoelectric Point: 8.6567

>NTDB_id=284963 EGX82_RS10950 WP_000274751.1 2093076..2093756(+) (radC) [Streptococcus agalactiae strain FDAARGOS_512]
MYHIELKKEALLPRERLVDLGADRLSNQELLAILLRTGIKEKPVLEISTQILENISSLADFGQLSLQELQSIKGIGQVKS
VEIKAMLELAKRIHKAEYDRKEQILSSEQLARKMMLELGDKKQEHLVAIYMDTQNRIIEQRTIFIGTVRRSVAEPREILH
YACKNMATSLIIIHNHPSGSPKPSESDLSFTKKIKRSCDHLGIVCLDHIIVGKNKYYSFREEADIL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=284963 EGX82_RS10950 WP_000274751.1 2093076..2093756(+) (radC) [Streptococcus agalactiae strain FDAARGOS_512]
ATGTACCATATTGAATTAAAAAAGGAAGCTTTACTACCAAGAGAACGCCTAGTTGATTTAGGCGCAGATAGATTGAGTAA
TCAGGAGTTATTAGCCATTCTCTTACGTACAGGTATTAAAGAAAAACCTGTTCTGGAAATTTCAACGCAAATTTTAGAAA
ACATAAGCAGTTTAGCAGATTTTGGTCAATTATCCTTACAGGAGTTGCAATCCATTAAAGGAATCGGTCAGGTTAAATCC
GTCGAAATAAAAGCTATGCTAGAACTAGCAAAACGGATTCACAAAGCTGAATATGATCGTAAAGAGCAAATTTTAAGTAG
TGAACAATTAGCGAGGAAAATGATGCTCGAATTAGGGGATAAAAAACAAGAACATTTAGTAGCTATTTATATGGATACAC
AAAATCGTATTATCGAACAGAGAACAATTTTTATTGGTACTGTACGTCGTTCAGTAGCAGAGCCAAGAGAAATTCTACAT
TATGCTTGTAAAAACATGGCAACTTCTTTGATTATCATACATAATCATCCCTCAGGTTCTCCAAAGCCCAGTGAAAGTGA
TTTAAGTTTCACTAAAAAAATAAAACGATCATGTGATCATCTGGGAATTGTTTGCCTAGATCACATCATCGTTGGAAAAA
ATAAATATTATAGTTTTCGAGAAGAAGCAGATATTTTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(12-80)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K0Z6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.292

100

0.593
  radC Streptococcus pneumoniae R6

58.85

100

0.589
  radC Streptococcus pneumoniae D39

58.85

100

0.589
  radC Streptococcus gordonii str. Challis substr. CH1

58.85

100

0.589
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

42.654

93.363

0.398

Multiple sequence alignment