Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   EGX82_RS04915 Genome accession   NZ_CP033822
Coordinates   935035..935334 (-) Length   99 a.a.
NCBI ID   WP_001867089.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_512     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 930035..940334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX82_RS04875 (EGX82_04875) - 930174..930839 (-) 666 WP_000008111.1 type II CAAX endopeptidase family protein -
  EGX82_RS04880 (EGX82_04880) - 930908..931363 (-) 456 WP_000905674.1 hypothetical protein -
  EGX82_RS04885 (EGX82_04885) - 931404..931541 (-) 138 WP_001867090.1 hypothetical protein -
  EGX82_RS04890 (EGX82_04890) - 931600..931806 (-) 207 WP_000798242.1 helix-turn-helix transcriptional regulator -
  EGX82_RS04895 (EGX82_04895) - 931957..933150 (-) 1194 WP_000047535.1 acetate kinase -
  EGX82_RS04900 (EGX82_04900) comGH 933182..934156 (-) 975 WP_001008570.1 class I SAM-dependent methyltransferase Machinery gene
  EGX82_RS04905 (EGX82_04905) comGG 934271..934642 (-) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  EGX82_RS04910 (EGX82_04910) comGF 934620..935081 (-) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  EGX82_RS04915 (EGX82_04915) comGE 935035..935334 (-) 300 WP_001867089.1 competence type IV pilus minor pilin ComGE Machinery gene
  EGX82_RS04920 (EGX82_04920) comGD 935306..935734 (-) 429 WP_000793381.1 competence type IV pilus minor pilin ComGD Machinery gene
  EGX82_RS04925 (EGX82_04925) comGB 935731..936774 (-) 1044 WP_223295592.1 competence type IV pilus assembly protein ComGB Machinery gene
  EGX82_RS04930 (EGX82_04930) comGA 936668..937639 (-) 972 WP_025197279.1 competence type IV pilus ATPase ComGA Machinery gene
  EGX82_RS04940 (EGX82_04940) - 937812..938177 (-) 366 WP_000285373.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11250.38 Da        Isoelectric Point: 10.6118

>NTDB_id=284908 EGX82_RS04915 WP_001867089.1 935035..935334(-) (comGE) [Streptococcus agalactiae strain FDAARGOS_512]
MVIIVRKKIRAYILLESLVGLAILVTITSLVISEINRQQSHIARRQHEQEVLILARMAVQTDQKILEANGVNIRIEESKN
KIVLFEGNKEILHVSKVKG

Nucleotide


Download         Length: 300 bp        

>NTDB_id=284908 EGX82_RS04915 WP_001867089.1 935035..935334(-) (comGE) [Streptococcus agalactiae strain FDAARGOS_512]
GTGGTAATTATCGTAAGAAAGAAAATTAGAGCCTATATTTTACTGGAAAGCCTAGTGGGATTAGCTATTTTAGTTACTAT
TACAAGTTTAGTAATAAGTGAAATCAATCGTCAACAATCTCATATTGCAAGAAGGCAACATGAGCAAGAAGTATTGATAT
TAGCTAGAATGGCTGTGCAAACTGATCAAAAAATATTAGAAGCAAATGGTGTTAATATTCGCATTGAAGAAAGTAAAAAT
AAAATTGTGCTCTTTGAAGGTAATAAGGAAATTTTGCACGTATCAAAAGTTAAGGGTTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

38.542

96.97

0.374
  comGE Streptococcus mutans UA159

38.542

96.97

0.374

Multiple sequence alignment