Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   EGX82_RS04905 Genome accession   NZ_CP033822
Coordinates   934271..934642 (-) Length   123 a.a.
NCBI ID   WP_000601104.1    Uniprot ID   Q8E233
Organism   Streptococcus agalactiae strain FDAARGOS_512     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 929271..939642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGX82_RS04870 (EGX82_04870) proC 929383..930153 (+) 771 WP_001867096.1 pyrroline-5-carboxylate reductase -
  EGX82_RS04875 (EGX82_04875) - 930174..930839 (-) 666 WP_000008111.1 type II CAAX endopeptidase family protein -
  EGX82_RS04880 (EGX82_04880) - 930908..931363 (-) 456 WP_000905674.1 hypothetical protein -
  EGX82_RS04885 (EGX82_04885) - 931404..931541 (-) 138 WP_001867090.1 hypothetical protein -
  EGX82_RS04890 (EGX82_04890) - 931600..931806 (-) 207 WP_000798242.1 helix-turn-helix transcriptional regulator -
  EGX82_RS04895 (EGX82_04895) - 931957..933150 (-) 1194 WP_000047535.1 acetate kinase -
  EGX82_RS04900 (EGX82_04900) comGH 933182..934156 (-) 975 WP_001008570.1 class I SAM-dependent methyltransferase Machinery gene
  EGX82_RS04905 (EGX82_04905) comGG 934271..934642 (-) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG Machinery gene
  EGX82_RS04910 (EGX82_04910) comGF 934620..935081 (-) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF Machinery gene
  EGX82_RS04915 (EGX82_04915) comGE 935035..935334 (-) 300 WP_001867089.1 competence type IV pilus minor pilin ComGE Machinery gene
  EGX82_RS04920 (EGX82_04920) comGD 935306..935734 (-) 429 WP_000793381.1 competence type IV pilus minor pilin ComGD Machinery gene
  EGX82_RS04925 (EGX82_04925) comGB 935731..936774 (-) 1044 WP_223295592.1 competence type IV pilus assembly protein ComGB Machinery gene
  EGX82_RS04930 (EGX82_04930) comGA 936668..937639 (-) 972 WP_025197279.1 competence type IV pilus ATPase ComGA Machinery gene
  EGX82_RS04940 (EGX82_04940) - 937812..938177 (-) 366 WP_000285373.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13879.09 Da        Isoelectric Point: 10.0693

>NTDB_id=284906 EGX82_RS04905 WP_000601104.1 934271..934642(-) (comGG) [Streptococcus agalactiae strain FDAARGOS_512]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFTGGYASYLQ
EGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=284906 EGX82_RS04905 WP_000601104.1 934271..934642(-) (comGG) [Streptococcus agalactiae strain FDAARGOS_512]
ATGATTTTAAAGAAGAAACTTAAAGCTGGCATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGTGACTCCATATCAGGAAAATGTTATTTTACAGGAGGATATGCTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAACAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E233

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366

Multiple sequence alignment