Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DA377_RS03785 Genome accession   NZ_CP028439
Coordinates   711176..711865 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain 8-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 706176..716865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA377_RS03765 - 706681..707757 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  DA377_RS03770 - 707847..709061 (-) 1215 WP_003151383.1 LCP family protein -
  DA377_RS03775 - 709066..709713 (-) 648 WP_003151384.1 YigZ family protein -
  DA377_RS03780 degS 709936..711099 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  DA377_RS03785 degU 711176..711865 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DA377_RS03790 - 711963..712811 (+) 849 WP_003151387.1 DegV family protein -
  DA377_RS03795 comFA 712919..714304 (+) 1386 WP_003151388.1 DEAD/DEAH box helicase Machinery gene
  DA377_RS03800 - 714362..714646 (+) 285 WP_003151389.1 competence protein ComFB -
  DA377_RS03805 comFC 714652..715341 (+) 690 WP_198317760.1 phosphoribosyltransferase family protein Machinery gene
  DA377_RS03810 - 715415..715834 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  DA377_RS03815 flgM 715904..716170 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DA377_RS03820 - 716185..716667 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=284906 DA377_RS03785 WP_003219701.1 711176..711865(+) (degU) [Bacillus velezensis strain 8-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=284906 DA377_RS03785 WP_003219701.1 711176..711865(+) (degU) [Bacillus velezensis strain 8-2]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment