Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ECRM9975_RS25865 | Genome accession | NZ_CP028432 |
| Coordinates | 4874985..4875521 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain RM9975 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4827146..4875521 | 4874985..4875521 | within | 0 |
Gene organization within MGE regions
Location: 4827146..4875521
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECRM9975_RS25570 (ECRM9975_25565) | - | 4827146..4827874 (-) | 729 | Protein_4717 | IS3-like element IS1203 family transposase | - |
| ECRM9975_RS25575 (ECRM9975_25570) | - | 4827883..4828542 (+) | 660 | Protein_4718 | DUF968 domain-containing protein | - |
| ECRM9975_RS25580 (ECRM9975_25575) | - | 4828556..4829308 (+) | 753 | WP_001047110.1 | antitermination protein | - |
| ECRM9975_RS25590 (ECRM9975_25585) | - | 4829657..4829770 (+) | 114 | Protein_4720 | DNA methylase | - |
| ECRM9975_RS25610 (ECRM9975_25605) | - | 4830588..4832438 (+) | 1851 | WP_000143076.1 | SASA family carbohydrate esterase | - |
| ECRM9975_RS25620 (ECRM9975_25615) | - | 4832878..4833093 (+) | 216 | WP_024164617.1 | class II holin family protein | - |
| ECRM9975_RS25625 (ECRM9975_25620) | rrrD | 4833093..4833590 (+) | 498 | WP_000075132.1 | lysozyme RrrD | - |
| ECRM9975_RS29310 | - | 4833807..4833992 (+) | 186 | WP_001208681.1 | Rz1 family lipoprotein | - |
| ECRM9975_RS25640 (ECRM9975_25635) | - | 4834520..4834834 (+) | 315 | WP_001303878.1 | PerC family transcriptional regulator | - |
| ECRM9975_RS25645 (ECRM9975_25640) | - | 4834954..4835046 (-) | 93 | Protein_4726 | DUF3950 domain-containing protein | - |
| ECRM9975_RS29960 | - | 4835088..4835411 (+) | 324 | Protein_4727 | HNH endonuclease | - |
| ECRM9975_RS25655 (ECRM9975_25650) | - | 4835735..4836298 (+) | 564 | WP_000958398.1 | terminase small subunit | - |
| ECRM9975_RS25660 (ECRM9975_25655) | - | 4836295..4837956 (+) | 1662 | WP_009453642.1 | terminase large subunit | - |
| ECRM9975_RS25665 (ECRM9975_25660) | - | 4838020..4839957 (+) | 1938 | WP_000173088.1 | phage major capsid protein | - |
| ECRM9975_RS25670 (ECRM9975_25665) | - | 4840002..4840223 (+) | 222 | WP_001063096.1 | hypothetical protein | - |
| ECRM9975_RS25675 (ECRM9975_25670) | - | 4840169..4842590 (+) | 2422 | Protein_4732 | phage portal protein | - |
| ECRM9975_RS25680 (ECRM9975_25675) | - | 4842587..4842913 (+) | 327 | WP_000125988.1 | head-tail connector protein | - |
| ECRM9975_RS25685 (ECRM9975_25680) | - | 4842923..4843273 (+) | 351 | WP_001007905.1 | phage head closure protein | - |
| ECRM9975_RS25690 (ECRM9975_25685) | - | 4843270..4843716 (+) | 447 | WP_000573374.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| ECRM9975_RS25695 (ECRM9975_25690) | - | 4843713..4844057 (+) | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| ECRM9975_RS25700 (ECRM9975_25695) | - | 4844124..4844840 (+) | 717 | WP_001275461.1 | major tail subunit | - |
| ECRM9975_RS25705 (ECRM9975_25700) | - | 4844846..4845220 (+) | 375 | WP_001030043.1 | phage tail assembly chaperone | - |
| ECRM9975_RS25710 (ECRM9975_25705) | - | 4845316..4845525 (+) | 210 | WP_001453698.1 | DUF4035 domain-containing protein | - |
| ECRM9975_RS25715 (ECRM9975_25710) | - | 4845577..4848819 (+) | 3243 | WP_000212952.1 | phage tail tape measure protein | - |
| ECRM9975_RS25720 (ECRM9975_25715) | - | 4848812..4849153 (+) | 342 | WP_000807964.1 | phage tail protein | - |
| ECRM9975_RS25725 (ECRM9975_25720) | - | 4849153..4849851 (+) | 699 | WP_001152209.1 | phage minor tail protein L | - |
| ECRM9975_RS25730 (ECRM9975_25725) | - | 4849862..4850605 (+) | 744 | WP_000194763.1 | C40 family peptidase | - |
| ECRM9975_RS25735 (ECRM9975_25730) | - | 4850602..4851183 (+) | 582 | WP_001089975.1 | tail assembly protein | - |
| ECRM9975_RS25745 (ECRM9975_25740) | - | 4851419..4854895 (+) | 3477 | WP_112033856.1 | host specificity protein J | - |
| ECRM9975_RS25750 (ECRM9975_25745) | - | 4854964..4855587 (+) | 624 | WP_001216290.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| ECRM9975_RS25755 (ECRM9975_25750) | - | 4855652..4856965 (+) | 1314 | WP_000279033.1 | prophage tail fiber N-terminal domain-containing protein | - |
| ECRM9975_RS25760 (ECRM9975_25755) | - | 4856967..4857236 (+) | 270 | WP_001023417.1 | phage tail fiber C-terminal domain-containing protein | - |
| ECRM9975_RS25765 (ECRM9975_25760) | - | 4857364..4857819 (+) | 456 | Protein_4749 | DUF1076 domain-containing protein | - |
| ECRM9975_RS25770 (ECRM9975_25765) | espW | 4857950..4859008 (-) | 1059 | WP_001345294.1 | T3SS effector EspW | - |
| ECRM9975_RS25775 (ECRM9975_25770) | - | 4859087..4859737 (-) | 651 | WP_001117798.1 | DUF1076 domain-containing protein | - |
| ECRM9975_RS25780 (ECRM9975_25775) | espM2 | 4859920..4860510 (+) | 591 | WP_001132154.1 | T3SS effector guanine nucleotide exchange factor EspM2 | - |
| ECRM9975_RS25790 (ECRM9975_25785) | - | 4860744..4860896 (+) | 153 | Protein_4753 | tail fiber assembly protein | - |
| ECRM9975_RS25795 (ECRM9975_25790) | - | 4861012..4861260 (-) | 249 | WP_001217542.1 | DinI-like family protein | - |
| ECRM9975_RS25800 (ECRM9975_25795) | - | 4861322..4862420 (-) | 1099 | Protein_4755 | site-specific integrase | - |
| ECRM9975_RS25805 (ECRM9975_25800) | dusA | 4862509..4863546 (+) | 1038 | WP_000543817.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| ECRM9975_RS25810 (ECRM9975_25805) | pspG | 4863680..4863922 (+) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| ECRM9975_RS25815 (ECRM9975_25810) | qorA | 4864088..4865071 (-) | 984 | WP_000235522.1 | quinone oxidoreductase | - |
| ECRM9975_RS25820 (ECRM9975_25815) | dnaB | 4865154..4866569 (+) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| ECRM9975_RS25825 (ECRM9975_25820) | alr | 4866622..4867701 (+) | 1080 | WP_001147328.1 | alanine racemase | - |
| ECRM9975_RS25830 (ECRM9975_25825) | tyrB | 4867954..4869147 (+) | 1194 | WP_000486997.1 | aromatic amino acid transaminase | - |
| ECRM9975_RS29965 | - | 4869369..4869620 (-) | 252 | WP_122989400.1 | hypothetical protein | - |
| ECRM9975_RS29970 | - | 4869650..4869872 (-) | 223 | Protein_4763 | hypothetical protein | - |
| ECRM9975_RS25840 (ECRM9975_25835) | aphA | 4870274..4870987 (+) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| ECRM9975_RS25845 (ECRM9975_25840) | yjbQ | 4871098..4871514 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| ECRM9975_RS25850 (ECRM9975_25845) | yjbR | 4871518..4871874 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| ECRM9975_RS25855 (ECRM9975_25850) | uvrA | 4871909..4874731 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| ECRM9975_RS25865 (ECRM9975_25860) | ssb | 4874985..4875521 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=284799 ECRM9975_RS25865 WP_000168305.1 4874985..4875521(+) (ssb) [Escherichia coli strain RM9975]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=284799 ECRM9975_RS25865 WP_000168305.1 4874985..4875521(+) (ssb) [Escherichia coli strain RM9975]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCACAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |