Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ECRM9131_RS17230 Genome accession   NZ_CP028429
Coordinates   3203045..3203557 (+) Length   170 a.a.
NCBI ID   WP_000532424.1    Uniprot ID   -
Organism   Escherichia coli strain RM9131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3201601..3202814 3203045..3203557 flank 231


Gene organization within MGE regions


Location: 3201601..3203557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECRM9131_RS17220 (ECRM9131_17215) - 3201601..3202814 (+) 1214 WP_162829202.1 IS3-like element IS1203 family transposase -
  ECRM9131_RS17225 (ECRM9131_17220) - 3202856..3203044 (+) 189 Protein_3184 recombinase -
  ECRM9131_RS17230 (ECRM9131_17225) ssb 3203045..3203557 (+) 513 WP_000532424.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19066.27 Da        Isoelectric Point: 9.4173

>NTDB_id=284762 ECRM9131_RS17230 WP_000532424.1 3203045..3203557(+) (ssb) [Escherichia coli strain RM9131]
MGRGVNRVIIIGRLGQDPEVRYSPSGTAFANLTVATSEQWRDKKTGEQKEQTEWHRVVMSGKLAEIASEYLRKGSEVYLE
GKLRTRKWQDQSGQDRFTTEVIVGVGGAMQMLGGKQGSNEQSSPQRNNGQQQRQQSQQHGNYGEPPMNFDDEIPFAPVTL
PFPRHAIHAI

Nucleotide


Download         Length: 513 bp        

>NTDB_id=284762 ECRM9131_RS17230 WP_000532424.1 3203045..3203557(+) (ssb) [Escherichia coli strain RM9131]
ATGGGACGTGGAGTTAATCGCGTAATCATTATCGGTAGATTAGGCCAAGATCCTGAGGTGCGCTATTCACCATCAGGAAC
GGCATTTGCAAACCTTACAGTTGCTACGTCAGAGCAATGGCGTGATAAGAAAACTGGAGAGCAAAAGGAGCAGACGGAGT
GGCACCGCGTGGTAATGAGCGGAAAACTGGCAGAAATTGCCAGCGAATATCTGCGAAAAGGCTCTGAGGTTTATCTTGAA
GGTAAATTGCGGACAAGAAAATGGCAGGATCAAAGCGGACAGGATAGGTTCACTACAGAAGTTATCGTGGGCGTTGGTGG
AGCCATGCAAATGCTTGGTGGCAAGCAAGGAAGCAATGAACAGTCTTCACCTCAGCGAAATAACGGCCAGCAACAAAGAC
AGCAATCTCAGCAGCATGGGAATTACGGCGAACCACCTATGAACTTCGACGATGAAATCCCCTTTGCACCAGTAACTCTC
CCCTTCCCTCGTCACGCTATTCACGCAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.195

100

0.606
  ssb Glaesserella parasuis strain SC1401

49.171

100

0.524
  ssb Neisseria meningitidis MC58

43.452

98.824

0.429
  ssb Neisseria gonorrhoeae MS11

42.424

97.059

0.412

Multiple sequence alignment