Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   EGY18_RS19700 Genome accession   NZ_CP033771
Coordinates   4140979..4141575 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain FDAARGOS_532     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4135979..4146575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY18_RS19680 (EGY18_19610) aroK 4137110..4137628 (-) 519 WP_003095833.1 shikimate kinase AroK -
  EGY18_RS19685 (EGY18_19615) pilQ 4137640..4139784 (-) 2145 WP_023083249.1 type 4a pilus secretin PilQ Machinery gene
  EGY18_RS19690 (EGY18_19620) comL/pilP 4139838..4140362 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  EGY18_RS19695 (EGY18_19625) pilO 4140359..4140982 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGY18_RS19700 (EGY18_19630) pilN 4140979..4141575 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  EGY18_RS19705 (EGY18_19635) pilM 4141575..4142639 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  EGY18_RS19710 (EGY18_19640) - 4142824..4145295 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=284715 EGY18_RS19700 WP_003095839.1 4140979..4141575(-) (pilN) [Pseudomonas aeruginosa strain FDAARGOS_532]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=284715 EGY18_RS19700 WP_003095839.1 4140979..4141575(-) (pilN) [Pseudomonas aeruginosa strain FDAARGOS_532]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTAGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAAGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369