Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SK637_RS06035 Genome accession   NZ_CP028415
Coordinates   1163592..1165574 (-) Length   660 a.a.
NCBI ID   WP_033688960.1    Uniprot ID   -
Organism   Streptococcus mitis strain SK637     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1158592..1170574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SK637_RS06010 (SK637_01173) - 1158820..1159659 (-) 840 WP_033688956.1 amino acid ABC transporter substrate-binding protein -
  SK637_RS06015 (SK637_01174) - 1159669..1160298 (-) 630 WP_033688957.1 amino acid ABC transporter ATP-binding protein -
  SK637_RS06020 (SK637_01175) - 1160308..1160949 (-) 642 WP_033687139.1 amino acid ABC transporter permease -
  SK637_RS06025 (SK637_01176) - 1161089..1162318 (-) 1230 WP_033688958.1 tetratricopeptide repeat protein -
  SK637_RS06030 (SK637_01177) - 1162308..1163474 (-) 1167 WP_033688959.1 AI-2E family transporter -
  SK637_RS06035 (SK637_01178) amiA3 1163592..1165574 (-) 1983 WP_033688960.1 peptide ABC transporter substrate-binding protein Regulator
  SK637_RS06040 (SK637_01179) - 1165751..1166764 (+) 1014 WP_033688961.1 lactonase family protein -
  SK637_RS06045 (SK637_01180) - 1166809..1167228 (-) 420 WP_033688962.1 F0F1 ATP synthase subunit epsilon -
  SK637_RS06050 (SK637_01181) atpD 1167239..1168645 (-) 1407 WP_000094357.1 F0F1 ATP synthase subunit beta -
  SK637_RS06055 (SK637_01182) - 1168731..1169609 (-) 879 WP_033688963.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72729.95 Da        Isoelectric Point: 4.8745

>NTDB_id=284714 SK637_RS06035 WP_033688960.1 1163592..1165574(-) (amiA3) [Streptococcus mitis strain SK637]
MKKRIFLAAGVAVLSAAVLAACSSGNANKEANKPVTYAYVFSSDPSTLDYTVSGNVSTKQVTGNVIDGLLENDQYGNLVP
SVAEDWTVSKDGLTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQESIKGLDDYVNGKTTDFSSV
GVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVNEDFLASKGDDFGKPTDVTSILYNGPYLLKGLTSKSSIEMTKNQNYW
DKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYISTNIDRVNYNHTA
KTSDAEKTSTKKALLNKDFRQALAFAVDRKAGISQVFGDEVGPRKLRTSFTPPTFVQVGDQTFGQVTKTELDKLDNIWKD
VSLDDAQDSLHNVDKAKAKFEAAKKTLQADGVQFPIHLDLPISSSNPDFIRQVQSYKQSIEEALGSDNVVVDIQQVSDDE
LGSMTTLATSNANTDWDINAVSGWSPDFADPSTYLDVFDPTSGPSLLGALGVAPGTDNPVIKTVGLDKYKELIDDANSEK
TDLQKRYSKYAKAQAWLSDSALVTPVYSDGAQMLVTKMVPGSGAGGWVGDKTSENSYKYLKIQDKIVTTKEMDEFRKKFA
DEKAKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=284714 SK637_RS06035 WP_033688960.1 1163592..1165574(-) (amiA3) [Streptococcus mitis strain SK637]
ATGAAAAAACGTATTTTCTTAGCAGCTGGAGTTGCTGTACTCTCGGCAGCTGTCCTAGCAGCGTGTTCATCTGGTAATGC
TAATAAAGAAGCAAATAAACCAGTTACTTATGCCTATGTATTTTCATCAGATCCTTCGACTCTGGATTATACAGTTTCTG
GAAATGTCAGCACAAAACAGGTCACAGGTAACGTTATTGACGGTTTACTTGAAAATGACCAATATGGGAATCTGGTTCCA
TCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACCTATACCTATAAAATCCGTCAGGGCGTCAAATGGTATAC
AAATGAGGGGGAAGAGTATGGTGAAGTCAAGGCTCAAGACTTTGTAACTGGTCTGAAGCATGCAGCAGATAAAAAATCAC
AGGCCCTCTATTTGGTACAGGAATCAATTAAAGGATTGGATGACTATGTAAATGGGAAAACAACAGATTTTTCTAGTGTT
GGGGTAAAAGCAACTGACGATTATACTGTAGTCTATACTTTGAATCATCCAGAATCTTTCTGGAATTCAAAAACAACAAT
GGGAGTCCTTGCACCAGTTAATGAAGACTTTTTAGCTTCTAAAGGAGATGACTTTGGTAAACCAACGGATGTAACGAGCA
TTCTATACAATGGACCTTATCTCCTCAAAGGTCTTACATCTAAGTCTTCTATCGAAATGACCAAAAATCAAAACTACTGG
GATAAACAAAATGTCTTTATTGATGATATCAAGTTATCCTTCTTTGATGGTCAAGATGCAGACTCTCTAGGACGCGGTTT
TGATGAGGGACACTATCCAGCTGCACCACTCTTTAAAAACTCTGCCAACTATGAACGTCTAAAAGAAAAATACAAGGATA
ATATTGTGTATGGTCAACAGCGTGGGGGAGTTTTTTATATCTCAACCAATATCGACCGTGTAAATTACAATCACACTGCT
AAAACAAGTGATGCAGAAAAAACTTCTACTAAGAAAGCCTTGTTAAACAAAGATTTCCGTCAAGCCTTGGCTTTTGCGGT
AGATCGTAAAGCAGGGATCTCTCAAGTATTTGGTGATGAAGTAGGACCTCGTAAGTTACGGACAAGTTTCACTCCTCCAA
CATTTGTTCAAGTAGGAGATCAAACATTTGGTCAAGTTACTAAGACAGAATTGGATAAATTGGATAATATCTGGAAAGAT
GTCAGTCTTGATGATGCCCAAGATTCACTTCATAATGTAGACAAGGCTAAGGCTAAGTTTGAAGCTGCTAAGAAAACTCT
CCAAGCTGATGGAGTACAGTTCCCAATTCATTTAGATTTGCCAATTTCTTCATCAAATCCAGATTTTATTCGTCAGGTTC
AGTCTTATAAACAATCCATTGAGGAAGCCTTAGGCTCTGACAATGTAGTTGTTGATATTCAACAAGTTTCTGATGACGAA
TTGGGAAGTATGACTACTCTAGCTACTTCCAATGCAAATACTGACTGGGATATTAATGCAGTCAGTGGTTGGAGTCCAGA
CTTTGCTGATCCATCAACCTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTCTCCTAGGTGCTCTTGGTGTGGCAC
CAGGAACAGACAATCCAGTTATTAAAACAGTTGGATTGGATAAATACAAAGAACTGATTGATGATGCAAATAGTGAGAAA
ACAGACCTTCAAAAACGTTATTCCAAATATGCTAAGGCCCAAGCTTGGTTGTCAGATAGTGCACTTGTTACTCCAGTATA
CTCTGATGGTGCTCAAATGCTAGTGACGAAAATGGTTCCTGGCAGTGGTGCCGGTGGCTGGGTAGGTGACAAGACTAGTG
AAAATAGCTACAAGTATCTGAAAATCCAAGATAAGATTGTCACTACTAAAGAAATGGATGAGTTCCGCAAGAAATTTGCT
GATGAAAAAGCCAAATCAAACGCTGATTATCAGAAGAACTTAGACCGTCATATCCAAGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.985

100

0.552
  amiA Streptococcus salivarius strain HSISS4

54.463

100

0.545
  amiA3 Streptococcus thermophilus LMG 18311

54.23

100

0.544

Multiple sequence alignment