Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SM12261_RS09400 Genome accession   NZ_CP028414
Coordinates   1868031..1868789 (+) Length   252 a.a.
NCBI ID   WP_000410370.1    Uniprot ID   -
Organism   Streptococcus mitis NCTC 12261     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1863031..1873789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM12261_RS09370 (SM12261_1808) comE 1863638..1864390 (-) 753 WP_000866073.1 competence system response regulator transcription factor ComE Regulator
  SM12261_RS09375 (SM12261_1809) comD 1864387..1865712 (-) 1326 WP_020902616.1 competence system sensor histidine kinase ComD Regulator
  SM12261_RS09380 (SM12261_1810) comC 1865725..1865847 (-) 123 WP_004238992.1 competence-stimulating peptide ComC Regulator
  SM12261_RS09390 (SM12261_1812) rlmH 1866130..1866609 (-) 480 WP_000695934.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SM12261_RS09395 (SM12261_1813) htrA 1866792..1867973 (+) 1182 WP_000681587.1 S1C family serine protease Regulator
  SM12261_RS09400 (SM12261_1814) spo0J 1868031..1868789 (+) 759 WP_000410370.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29134.45 Da        Isoelectric Point: 6.3016

>NTDB_id=284667 SM12261_RS09400 WP_000410370.1 1868031..1868789(+) (spo0J) [Streptococcus mitis NCTC 12261]
MEKFEMISITDIQKNPYQPRKEFDGEKLHELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRYIPAVVKQ
LSDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGQLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKLQKNDYFIQNEEEQLKKILGLDVEIKLSKKDSGKIIIAFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=284667 SM12261_RS09400 WP_000410370.1 1868031..1868789(+) (spo0J) [Streptococcus mitis NCTC 12261]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAGAAAAATCCCTATCAACCTCGAAAAGAATTTGATGGAGAAAA
ACTACATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTAAGGTATATCCCAGCTGTTGTTAAACAG
CTTTCAGATCAAGAGATGATGGTCCAGTCCATCATTGAAAATTTGCAAAGAGAAAATTTAAATCCAATAGAAGAAGCACG
CGCCTATGAATCTCTTGTAGAGAAAGGATTTACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCTTATATCA
GCAACTCTATTCGCTTGCTGTCCTTGCCAGAACAGATCCTTTCAGAAGTAGAAAATGGCCAACTATCACAAGCCCATGCG
CGTTCGCTAGTTGGGTTGAATAAGGAACAACAAGACTATTTCTTTCAACGAATTATAGAAGAAGACATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACTGCAAAAAAATGATTATTTCATACAAAATGAAGAAGAACAGT
TAAAAAAAATACTCGGATTAGATGTAGAAATCAAACTGTCTAAAAAAGATAGTGGAAAAATCATTATTGCTTTCTCAAAC
CAAGAAGAATACAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.802

100

0.5

Multiple sequence alignment