Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   EGY18_RS04980 Genome accession   NZ_CP033771
Coordinates   1051317..1051931 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain FDAARGOS_532     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1046317..1056931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY18_RS04960 (EGY18_04935) - 1047760..1048389 (+) 630 WP_003091190.1 CsiV family protein -
  EGY18_RS04965 (EGY18_04940) - 1048435..1049172 (-) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  EGY18_RS04970 (EGY18_04945) nagZ 1049184..1050182 (-) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  EGY18_RS04975 (EGY18_04950) psrA 1050384..1051085 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  EGY18_RS04980 (EGY18_04955) dinR/lexA 1051317..1051931 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  EGY18_RS04985 (EGY18_04960) sulA 1051943..1052428 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  EGY18_RS04990 (EGY18_04965) - 1052450..1052683 (-) 234 WP_003109483.1 hypothetical protein -
  EGY18_RS04995 (EGY18_04970) - 1052889..1053407 (-) 519 WP_003113979.1 DUF6586 family protein -
  EGY18_RS05000 (EGY18_04975) topA 1053514..1056120 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  EGY18_RS05005 (EGY18_04980) - 1056211..1056474 (-) 264 WP_003109484.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=284667 EGY18_RS04980 WP_003091196.1 1051317..1051931(+) (dinR/lexA) [Pseudomonas aeruginosa strain FDAARGOS_532]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=284667 EGY18_RS04980 WP_003091196.1 1051317..1051931(+) (dinR/lexA) [Pseudomonas aeruginosa strain FDAARGOS_532]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387

Multiple sequence alignment