Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   CLIM_RS09155 Genome accession   NC_010803
Coordinates   1995055..1995723 (+) Length   222 a.a.
NCBI ID   WP_012466730.1    Uniprot ID   -
Organism   Chlorobium limicola DSM 245     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1990055..2000723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLIM_RS09135 (Clim_1814) ccoS 1991451..1991639 (+) 189 WP_012466726.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  CLIM_RS09140 (Clim_1815) - 1991636..1992322 (+) 687 WP_012466727.1 sulfite exporter TauE/SafE family protein -
  CLIM_RS09145 (Clim_1816) - 1992499..1993854 (+) 1356 WP_012466728.1 cytochrome ubiquinol oxidase subunit I -
  CLIM_RS09150 (Clim_1817) cydB 1993872..1994885 (+) 1014 WP_012466729.1 cytochrome d ubiquinol oxidase subunit II -
  CLIM_RS09155 (Clim_1818) ysxA/radC 1995055..1995723 (+) 669 WP_012466730.1 RadC family protein Machinery gene
  CLIM_RS09160 (Clim_1819) - 1995889..1996146 (-) 258 WP_012466731.1 cold-shock protein -
  CLIM_RS09165 (Clim_1820) - 1996357..1997088 (+) 732 WP_012466732.1 SDR family oxidoreductase -
  CLIM_RS09170 (Clim_1822) - 1997296..1997754 (+) 459 WP_012466734.1 GatB/YqeY domain-containing protein -
  CLIM_RS09175 (Clim_1823) serS 1997774..1999057 (+) 1284 WP_012466735.1 serine--tRNA ligase -
  CLIM_RS09180 (Clim_1824) metX 1999279..2000355 (-) 1077 WP_012466736.1 homoserine O-acetyltransferase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25126.02 Da        Isoelectric Point: 9.4691

>NTDB_id=28455 CLIM_RS09155 WP_012466730.1 1995055..1995723(+) (ysxA/radC) [Chlorobium limicola DSM 245]
MRIHDLDPENRPRERLLLYGASSLSPAELLAIILRSGSKNLNIIDTCHEIIAAYGLERLADLQLSELQKIRGIGPAKAMQ
ISAIFELNKRIHFRKNNNRKILSARDVSEYMAGRIPDETKEHLFVLHLNTKNRVIRHDIVSVGTLNASLIHPREVFKSAI
RESAHAIILVHNHPSGDVEPSNADRQVTEILKKAGAILQIELLDHVIVGKENWFSFREHSLL

Nucleotide


Download         Length: 669 bp        

>NTDB_id=28455 CLIM_RS09155 WP_012466730.1 1995055..1995723(+) (ysxA/radC) [Chlorobium limicola DSM 245]
ATGCGCATTCATGATCTCGACCCTGAAAACAGGCCAAGGGAACGACTGCTGCTCTATGGCGCCTCATCACTCAGCCCGGC
GGAACTTCTGGCAATCATCCTCCGTTCAGGTTCAAAAAATCTGAACATCATCGATACCTGTCACGAAATCATCGCAGCTT
ACGGACTTGAACGACTCGCCGACCTTCAGCTTTCGGAACTGCAGAAAATCAGAGGAATAGGCCCGGCAAAAGCAATGCAG
ATCTCTGCTATTTTCGAACTGAACAAACGGATTCATTTCCGAAAAAACAATAACAGAAAAATTCTGTCGGCCAGAGATGT
GTCCGAATACATGGCGGGACGAATACCGGATGAAACAAAGGAACACCTTTTTGTTCTGCATCTCAATACCAAAAACAGGG
TGATCCGTCACGACATCGTATCGGTAGGAACCCTGAACGCATCACTTATCCATCCGAGAGAGGTTTTTAAATCAGCTATC
AGAGAGAGCGCTCACGCAATTATTCTCGTACACAACCACCCTTCGGGGGATGTGGAACCGAGTAACGCTGACCGGCAGGT
AACTGAAATTCTCAAAAAGGCAGGAGCGATACTGCAGATAGAACTGCTCGATCATGTAATTGTAGGAAAAGAAAACTGGT
TCAGTTTTCGTGAACACTCGCTTCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-219)

UPF0758 N-terminal (UPF0758_N)

(3-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

41.964

100

0.423
  radC Streptococcus gordonii str. Challis substr. CH1

41.706

95.045

0.396
  radC Streptococcus pneumoniae TIGR4

40.376

95.946

0.387
  radC Streptococcus pneumoniae R6

39.906

95.946

0.383
  radC Streptococcus pneumoniae D39

39.906

95.946

0.383

Multiple sequence alignment