Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I3Y_RS05250 Genome accession   NZ_CP028379
Coordinates   1092254..1092883 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O145 str. RM9872     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087254..1097883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I3Y_RS05225 (I3Y_05370) ycbZ 1087641..1089401 (-) 1761 WP_000156509.1 Lon protease family protein -
  I3Y_RS05230 (I3Y_05375) matP 1089587..1090039 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  I3Y_RS05235 (I3Y_05380) ompA 1090114..1091169 (-) 1056 WP_000750414.1 porin OmpA -
  I3Y_RS05245 (I3Y_05390) sulA 1091526..1092035 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  I3Y_RS05250 (I3Y_05395) sxy/tfoX 1092254..1092883 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  I3Y_RS05255 (I3Y_05400) yccS 1092846..1095008 (-) 2163 WP_000875041.1 YccS family putative transporter -
  I3Y_RS05260 (I3Y_05405) yccF 1095018..1095464 (-) 447 WP_001261235.1 YccF domain-containing protein -
  I3Y_RS05265 (I3Y_05410) helD 1095587..1097641 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=284487 I3Y_RS05250 WP_000839153.1 1092254..1092883(+) (sxy/tfoX) [Escherichia coli O145 str. RM9872]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=284487 I3Y_RS05250 WP_000839153.1 1092254..1092883(+) (sxy/tfoX) [Escherichia coli O145 str. RM9872]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment