Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C9888_RS21285 Genome accession   NZ_CP028375
Coordinates   4220577..4221095 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain W1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4215577..4226095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9888_RS21250 - 4215602..4216933 (+) 1332 WP_014419380.1 MFS transporter -
  C9888_RS21255 - 4216965..4217345 (-) 381 WP_014419381.1 VOC family protein -
  C9888_RS21260 - 4217402..4218340 (-) 939 WP_014419382.1 LacI family DNA-binding transcriptional regulator -
  C9888_RS21950 - 4218403..4218639 (-) 237 WP_014722092.1 endonuclease/exonuclease/phosphatase family protein -
  C9888_RS21955 - 4218587..4218733 (+) 147 Protein_4114 exodeoxyribonuclease III -
  C9888_RS21960 - 4218721..4218969 (-) 249 WP_022554060.1 endonuclease/exonuclease/phosphatase family protein -
  C9888_RS21270 - 4218966..4219523 (-) 558 WP_014419383.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  C9888_RS21275 - 4219520..4220101 (-) 582 WP_014419384.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  C9888_RS21280 rpsR 4220294..4220533 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  C9888_RS21285 ssbA 4220577..4221095 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  C9888_RS21290 rpsF 4221135..4221422 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  C9888_RS21295 ychF 4221534..4222634 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  C9888_RS21300 - 4222761..4224764 (-) 2004 WP_014419385.1 molybdopterin-dependent oxidoreductase -
  C9888_RS21305 - 4224811..4225017 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=284484 C9888_RS21285 WP_004392979.1 4220577..4221095(-) (ssbA) [Bacillus velezensis strain W1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=284484 C9888_RS21285 WP_004392979.1 4220577..4221095(-) (ssbA) [Bacillus velezensis strain W1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment