Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   C9J74_RS17770 Genome accession   NZ_CP028358
Coordinates   3793346..3794404 (-) Length   352 a.a.
NCBI ID   WP_010484061.1    Uniprot ID   A0A0L8AA94
Organism   Stenotrophomonas maltophilia strain W18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3788346..3799404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J74_RS17750 - 3789281..3791254 (-) 1974 WP_049444603.1 type IV pilus secretin PilQ family protein -
  C9J74_RS17755 - 3791276..3791812 (-) 537 WP_234367951.1 pilus assembly protein PilP -
  C9J74_RS17760 pilO 3791809..3792465 (-) 657 WP_049444605.1 type 4a pilus biogenesis protein PilO -
  C9J74_RS17765 - 3792462..3793346 (-) 885 WP_049444607.1 PilN domain-containing protein -
  C9J74_RS17770 pilM 3793346..3794404 (-) 1059 WP_010484061.1 pilus assembly protein PilM Machinery gene
  C9J74_RS17775 - 3794624..3797047 (+) 2424 WP_107380314.1 penicillin-binding protein 1A -
  C9J74_RS17780 - 3797284..3797928 (+) 645 WP_046984289.1 hypothetical protein -
  C9J74_RS17785 - 3798073..3798822 (-) 750 WP_046984299.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37753.41 Da        Isoelectric Point: 4.4089

>NTDB_id=284347 C9J74_RS17770 WP_010484061.1 3793346..3794404(-) (pilM) [Stenotrophomonas maltophilia strain W18]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=284347 C9J74_RS17770 WP_010484061.1 3793346..3794404(-) (pilM) [Stenotrophomonas maltophilia strain W18]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGTGGCAACCGTTTTCGTGTGGAACATTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGGGCGATGAACCGCTCGGGGAGCAAGGCCAAGCTGGCTGCTGCTGCC
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAAAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGATGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGAGGGCGTGGTCGCGCTTGTCGATATCGGCGCCACCATGACCACCCTCAATGTCCTGCGTGGTGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGTCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGTGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCAGGCAGCGAGTTCAACCGCGTTGACCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTCGGCGGCCTGCCGGAAATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCG
CAGATGACCCTGGGGCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8AA94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment