Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Tharo_RS13650 Genome accession   NZ_CP028339
Coordinates   2892814..2893317 (-) Length   167 a.a.
NCBI ID   WP_107221676.1    Uniprot ID   -
Organism   Thauera aromatica K172     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2887814..2898317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Tharo_RS13630 (Tharo_2690) - 2889332..2890390 (-) 1059 WP_107221672.1 efflux RND transporter periplasmic adaptor subunit -
  Tharo_RS13635 (Tharo_2691) - 2890471..2890857 (-) 387 WP_107221673.1 CbiX/SirB N-terminal domain-containing protein -
  Tharo_RS13640 (Tharo_2692) - 2890937..2891737 (-) 801 WP_107221674.1 tRNA threonylcarbamoyladenosine dehydratase -
  Tharo_RS13645 (Tharo_2693) - 2891745..2892707 (-) 963 WP_107221675.1 MBL fold metallo-hydrolase -
  Tharo_RS13650 (Tharo_2694) ssb 2892814..2893317 (-) 504 WP_107221676.1 single-stranded DNA-binding protein Machinery gene
  Tharo_RS13655 (Tharo_2695) - 2893375..2894583 (-) 1209 WP_245880905.1 MFS transporter -
  Tharo_RS13660 (Tharo_2696) uvrA 2894753..2897638 (+) 2886 WP_107221677.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17993.01 Da        Isoelectric Point: 5.9671

>NTDB_id=284228 Tharo_RS13650 WP_107221676.1 2892814..2893317(-) (ssb) [Thauera aromatica K172]
MASVNKVILIGNLGADPENRFAPSGDAICNLRIATAETWRDKNTGERREATEWHRVVFFGKLAEIAGQYLKKGSQVYIEG
SLRTRKWQDQSGQERYTTEIRGDEMKMLGRREGGDAPMRGGAGEGGWDAPSPAAARAPASAPQRPAAAPSAAPQAGGFGD
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=284228 Tharo_RS13650 WP_107221676.1 2892814..2893317(-) (ssb) [Thauera aromatica K172]
ATGGCATCCGTGAACAAAGTCATCCTGATCGGCAACCTCGGCGCCGATCCGGAAAACCGCTTCGCCCCCTCGGGCGACGC
GATCTGCAACCTGCGCATCGCCACCGCCGAAACCTGGCGCGACAAGAACACCGGCGAGCGCCGCGAGGCCACCGAGTGGC
ACCGCGTCGTCTTCTTCGGCAAGCTCGCCGAGATCGCCGGGCAATACTTGAAAAAGGGCAGCCAGGTCTATATCGAAGGC
AGCCTGCGCACACGCAAGTGGCAGGATCAGAGCGGCCAGGAGCGCTACACGACGGAAATCCGCGGTGACGAGATGAAGAT
GCTCGGCCGCCGCGAAGGCGGCGATGCGCCGATGCGCGGCGGGGCGGGCGAGGGCGGCTGGGATGCGCCGTCTCCGGCGG
CGGCGCGTGCGCCGGCTTCGGCGCCGCAGCGCCCGGCGGCGGCGCCCTCCGCCGCTCCGCAGGCGGGCGGCTTCGGCGAT
TTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.459

100

0.623
  ssb Glaesserella parasuis strain SC1401

52.222

100

0.563
  ssb Neisseria meningitidis MC58

51.724

100

0.539
  ssb Neisseria gonorrhoeae MS11

51.149

100

0.533

Multiple sequence alignment