Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Tharo_RS05355 Genome accession   NZ_CP028339
Coordinates   1112538..1113389 (-) Length   283 a.a.
NCBI ID   WP_107220308.1    Uniprot ID   -
Organism   Thauera aromatica K172     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1107538..1118389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Tharo_RS05330 (Tharo_1056) prfA 1107540..1108625 (+) 1086 WP_107220303.1 peptide chain release factor 1 -
  Tharo_RS05335 (Tharo_1057) prmC 1108622..1109491 (+) 870 WP_107220304.1 peptide chain release factor N(5)-glutamine methyltransferase -
  Tharo_RS05340 (Tharo_1058) aspS 1109556..1111355 (-) 1800 WP_107220305.1 aspartate--tRNA ligase -
  Tharo_RS05345 (Tharo_1059) - 1111457..1112083 (-) 627 WP_107220306.1 DUF502 domain-containing protein -
  Tharo_RS05350 (Tharo_1060) - 1112133..1112390 (-) 258 WP_107220307.1 zinc ribbon domain-containing protein -
  Tharo_RS05355 (Tharo_1061) pilD 1112538..1113389 (-) 852 WP_107220308.1 A24 family peptidase Machinery gene
  Tharo_RS05360 (Tharo_1062) pilC 1113393..1114622 (-) 1230 WP_107220309.1 type II secretion system F family protein Machinery gene
  Tharo_RS05365 (Tharo_1063) pilB 1114637..1116352 (-) 1716 WP_107220310.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Tharo_RS05370 (Tharo_1064) - 1116441..1117721 (-) 1281 WP_107220311.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30609.22 Da        Isoelectric Point: 8.3659

>NTDB_id=284219 Tharo_RS05355 WP_107220308.1 1112538..1113389(-) (pilD) [Thauera aromatica K172]
MAELLHEPFVLVPLLSLVGLFVGSFLNVVIHRLPKMMERDWHAQAAELRGEPAPEAARFNLATPRSRCPHCGHRLSALEN
IPVLSFIFLRGRCRHCGAGISKRYPVVELCTAALSGVAAWHFGASTATLGALPFIWALVALSFIDLDTQLLPDSITLPLL
WLGLAFNTGGVFTDLHSAVIGAMAGYLALWTVYWLFRLATGKEGMGYGDFKLLAAIGAWLGWQVLPLTILLSSLVGAIVG
IALIAFARHGRNVPIPFGPYLGAAGLIALLWGETLTTRYLGLF

Nucleotide


Download         Length: 852 bp        

>NTDB_id=284219 Tharo_RS05355 WP_107220308.1 1112538..1113389(-) (pilD) [Thauera aromatica K172]
ATGGCTGAACTCCTGCACGAACCGTTCGTTCTCGTCCCGCTGCTGAGCCTGGTCGGGCTTTTCGTCGGCAGCTTCCTCAA
CGTCGTCATCCATCGCCTGCCGAAGATGATGGAGCGCGACTGGCACGCCCAGGCCGCCGAACTGCGCGGCGAGCCGGCGC
CCGAAGCTGCGCGCTTCAACCTCGCCACGCCACGCTCGCGCTGCCCGCACTGCGGCCACCGCCTGTCCGCGCTGGAAAAC
ATCCCGGTGCTCAGCTTCATCTTCCTGCGCGGCCGCTGCAGGCACTGCGGCGCCGGAATCAGCAAGCGCTACCCGGTCGT
CGAACTCTGCACCGCCGCCCTCTCCGGCGTGGCCGCCTGGCATTTCGGTGCCAGCACCGCCACGCTCGGCGCGCTGCCGT
TCATCTGGGCGCTGGTGGCGCTGAGCTTCATCGACCTTGACACCCAGCTGCTGCCCGACAGCATCACCCTGCCCCTGCTG
TGGCTGGGCCTCGCGTTCAACACCGGAGGCGTATTCACCGACCTGCACAGCGCGGTCATCGGCGCCATGGCCGGTTATCT
CGCCCTGTGGACGGTGTACTGGCTGTTCAGGCTCGCCACCGGCAAGGAGGGCATGGGTTACGGCGACTTCAAACTGCTGG
CGGCGATCGGTGCCTGGCTCGGCTGGCAGGTGCTGCCGCTCACCATCCTGCTATCCTCGCTGGTGGGGGCGATCGTCGGC
ATCGCCCTGATCGCCTTCGCGCGCCACGGCCGCAACGTGCCGATTCCGTTCGGCCCTTATCTCGGCGCCGCCGGCCTGAT
CGCACTATTGTGGGGTGAGACCCTGACCACGCGTTACCTGGGTCTGTTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.623

97.527

0.523
  pilD Vibrio campbellii strain DS40M4

50.877

100

0.512
  pilD Acinetobacter baumannii D1279779

50.929

95.053

0.484
  pilD Neisseria gonorrhoeae MS11

50.758

93.286

0.474
  pilD Acinetobacter nosocomialis M2

49.814

95.053

0.473

Multiple sequence alignment