Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C7M50_RS04420 | Genome accession | NZ_CP028269 |
| Coordinates | 878519..879046 (+) | Length | 175 a.a. |
| NCBI ID | WP_011672766.1 | Uniprot ID | A0A833TK56 |
| Organism | Pediococcus pentosaceus strain SRCM102740 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 873519..884046
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7M50_RS04410 (C7M50_00886) | gyrA | 875472..877952 (+) | 2481 | WP_269668170.1 | DNA gyrase subunit A | - |
| C7M50_RS04415 (C7M50_00887) | rpsF | 878199..878483 (+) | 285 | WP_002833865.1 | 30S ribosomal protein S6 | - |
| C7M50_RS04420 (C7M50_00888) | ssb | 878519..879046 (+) | 528 | WP_011672766.1 | single-stranded DNA-binding protein | Machinery gene |
| C7M50_RS04425 (C7M50_00889) | rpsR | 879070..879306 (+) | 237 | WP_002833867.1 | 30S ribosomal protein S18 | - |
| C7M50_RS04430 (C7M50_00890) | - | 879509..881509 (+) | 2001 | WP_002833868.1 | DHH family phosphoesterase | - |
| C7M50_RS04435 (C7M50_00891) | rplI | 881515..881967 (+) | 453 | WP_011672767.1 | 50S ribosomal protein L9 | - |
| C7M50_RS04440 (C7M50_00892) | dnaB | 882016..883413 (+) | 1398 | WP_002833870.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19174.71 Da Isoelectric Point: 4.7512
>NTDB_id=283903 C7M50_RS04420 WP_011672766.1 878519..879046(+) (ssb) [Pediococcus pentosaceus strain SRCM102740]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NSGQSIDISDDDLPF
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NSGQSIDISDDDLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=283903 C7M50_RS04420 WP_011672766.1 878519..879046(+) (ssb) [Pediococcus pentosaceus strain SRCM102740]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATAGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATAGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
67.582 |
100 |
0.703 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.286 |
100 |
0.623 |
| ssb | Glaesserella parasuis strain SC1401 |
33.871 |
100 |
0.36 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
60.571 |
0.36 |