Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C7M49_RS04875 Genome accession   NZ_CP028266
Coordinates   995547..996074 (-) Length   175 a.a.
NCBI ID   WP_011672766.1    Uniprot ID   A0A833TK56
Organism   Pediococcus pentosaceus strain SRCM102739     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 990547..1001074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M49_RS04855 (C7M49_00984) dnaB 991180..992577 (-) 1398 WP_002833870.1 replicative DNA helicase -
  C7M49_RS04860 (C7M49_00985) rplI 992626..993078 (-) 453 WP_011672767.1 50S ribosomal protein L9 -
  C7M49_RS04865 (C7M49_00986) - 993084..995084 (-) 2001 WP_002833868.1 DHH family phosphoesterase -
  C7M49_RS04870 (C7M49_00987) rpsR 995287..995523 (-) 237 WP_002833867.1 30S ribosomal protein S18 -
  C7M49_RS04875 (C7M49_00988) ssb 995547..996074 (-) 528 WP_011672766.1 single-stranded DNA-binding protein Machinery gene
  C7M49_RS04880 (C7M49_00989) rpsF 996110..996394 (-) 285 WP_002833865.1 30S ribosomal protein S6 -
  C7M49_RS04885 (C7M49_00990) gyrA 996641..999121 (-) 2481 WP_269668170.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19174.71 Da        Isoelectric Point: 4.7512

>NTDB_id=283876 C7M49_RS04875 WP_011672766.1 995547..996074(-) (ssb) [Pediococcus pentosaceus strain SRCM102739]
MINRTVLVGRLTRDPELRYTGSGAAVVTFTVAVNRQFTNSQGEREADFINCVMWRKAAENFANFTRKGSLVGIDGRIQTR
SYENQQGQRVYVTEVVAENFSLLESRSSSERRQGGENNFGNNQSAPSQQPTSSGNPFDGGQSNNSGAQQPNNSNPNDPFA
NSGQSIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=283876 C7M49_RS04875 WP_011672766.1 995547..996074(-) (ssb) [Pediococcus pentosaceus strain SRCM102739]
ATGATTAACCGAACAGTGCTTGTCGGACGCCTAACAAGGGACCCTGAACTACGATATACAGGTAGTGGAGCTGCAGTAGT
AACTTTTACAGTTGCTGTTAATCGTCAGTTTACTAATTCACAAGGTGAACGCGAAGCTGACTTTATTAATTGTGTTATGT
GGCGTAAAGCTGCAGAAAACTTTGCTAACTTCACTCGGAAGGGTTCATTAGTTGGTATCGACGGACGGATTCAAACCCGT
TCTTATGAAAACCAACAAGGCCAACGAGTTTATGTTACCGAGGTTGTAGCCGAAAACTTCTCTCTTCTTGAATCACGTTC
ATCTTCTGAACGTCGTCAAGGTGGAGAAAATAATTTTGGCAATAATCAATCTGCCCCTTCACAACAACCAACATCATCCG
GAAATCCATTTGACGGAGGACAATCGAATAATAGTGGTGCACAACAACCTAACAATTCGAACCCTAATGACCCATTTGCT
AATAGCGGTCAGTCAATTGATATTTCTGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A833TK56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.582

100

0.703
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.286

100

0.623
  ssb Glaesserella parasuis strain SC1401

33.871

100

0.36
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.571

0.36

Multiple sequence alignment