NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	EFV54_RS05365	Genome accession	NZ_CP033607
Coordinates	1035763..1036443 (+)	Length	226 a.a.
NCBI ID	WP_003131898.1	Uniprot ID	Q9CGT5
Organism	Lactococcus lactis strain IL1403
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1030763..1041443

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EFV54_RS05345 (EFV54_05345)	-	1031127..1031642 (+)	516	WP_003131889.1	DUF2127 domain-containing protein	-
EFV54_RS05350 (EFV54_05350)	-	1031646..1032971 (+)	1326	WP_003131891.1	HAMP domain-containing sensor histidine kinase	-
EFV54_RS05355 (EFV54_05355)	-	1032978..1033634 (+)	657	WP_010905677.1	phosphatase PAP2 family protein	-
EFV54_RS05360 (EFV54_05360)	glmS	1033815..1035632 (+)	1818	WP_010905678.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
EFV54_RS05365 (EFV54_05365)	radC	1035763..1036443 (+)	681	WP_003131898.1	DNA repair protein RadC	Machinery gene
EFV54_RS05370 (EFV54_05370)	-	1036642..1037766 (-)	1125	WP_010905679.1	site-specific integrase	-
EFV54_RS05375 (EFV54_05375)	-	1037889..1038434 (-)	546	WP_010905680.1	PH domain-containing protein	-
EFV54_RS05380 (EFV54_05380)	-	1038491..1038928 (-)	438	WP_010905681.1	ImmA/IrrE family metallo-endopeptidase	-
EFV54_RS05385 (EFV54_05385)	-	1038925..1039467 (-)	543	WP_010905682.1	helix-turn-helix domain-containing protein	-
EFV54_RS05390 (EFV54_05390)	-	1039635..1039853 (+)	219	WP_010905683.1	DUF739 family protein	-
EFV54_RS05395 (EFV54_05395)	-	1039890..1040633 (+)	744	WP_010905684.1	ORF6C domain-containing protein	-
EFV54_RS05400 (EFV54_05400)	-	1040646..1040981 (+)	336	WP_003131910.1	DUF771 domain-containing protein	-
EFV54_RS05405 (EFV54_05405)	-	1041119..1041313 (+)	195	WP_010905685.1	hypothetical protein	-

Sequence

Protein

Download Length: 226 a.a. Molecular weight: 25801.67 Da Isoelectric Point: 7.9247

                                >NTDB_id=283840 EFV54_RS05365 WP_003131898.1 1035763..1036443(+) (radC) [Lactococcus lactis strain IL1403]

MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS

IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY

HAIKNLSVGLLVAHNHPSGNLKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide

Download Length: 681 bp

                                >NTDB_id=283840 EFV54_RS05365 WP_003131898.1 1035763..1036443(+) (radC) [Lactococcus lactis strain IL1403]

ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA

TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC

ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC

ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC

CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC

AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT

CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTAAAACCAAGTCAAGCTGA

TAAAATATTTACTACCAAAATAAAAAAATCTTGCGAGGATGTGGGGATCAATTTTATTGATCATATTATTGTAGGGGCTG

GTAATTATTTTAGCTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(5-80)

RadC-like JAB domain (RadC)

(115-223)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	Q9CGT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Streptococcus pneumoniae TIGR4	45.946	98.23	0.451
radC	Streptococcus pneumoniae R6	45.946	98.23	0.451
radC	Streptococcus pneumoniae D39	45.946	98.23	0.451
radC	Streptococcus gordonii str. Challis substr. CH1	45.045	98.23	0.442
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	40.541	98.23	0.398

Detailed information NTG0283840