Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   EFD52_RS07575 Genome accession   NZ_CP033606
Coordinates   1552941..1553939 (-) Length   332 a.a.
NCBI ID   WP_003129447.1    Uniprot ID   -
Organism   Lactococcus lactis strain IL6288     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1547941..1558939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS07555 (EFD52_07555) trxA 1548332..1548646 (-) 315 WP_003129442.1 thioredoxin -
  EFD52_RS07560 (EFD52_07560) mutS/mutS2 1548743..1551073 (-) 2331 WP_003129443.1 endonuclease MutS2 Machinery gene
  EFD52_RS07565 (EFD52_07565) - 1551118..1551678 (-) 561 WP_003129445.1 CvpA family protein -
  EFD52_RS07570 (EFD52_07570) - 1551838..1552803 (-) 966 WP_003129446.1 NAD(P)/FAD-dependent oxidoreductase -
  EFD52_RS07575 (EFD52_07575) ccpA 1552941..1553939 (-) 999 WP_003129447.1 catabolite control protein A Regulator
  EFD52_RS07580 (EFD52_07580) - 1554154..1555242 (+) 1089 WP_010906076.1 Xaa-Pro peptidase family protein -
  EFD52_RS07585 (EFD52_07585) - 1555371..1557377 (-) 2007 WP_010906077.1 cell division site-positioning protein MapZ family protein -
  EFD52_RS07590 (EFD52_07590) - 1557525..1558679 (-) 1155 WP_010906078.1 class I SAM-dependent RNA methyltransferase -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36602.71 Da        Isoelectric Point: 4.9196

>NTDB_id=283769 EFD52_RS07575 WP_003129447.1 1552941..1553939(-) (ccpA) [Lactococcus lactis strain IL6288]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=283769 EFD52_RS07575 WP_003129447.1 1552941..1553939(-) (ccpA) [Lactococcus lactis strain IL6288]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGAAGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGCGGACTCGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGGGTTGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGACGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTCGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGCGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGCATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

100

100

1
  ccpA Streptococcus pneumoniae D39

57.402

99.699

0.572
  ccpA Streptococcus gordonii str. Challis substr. CH1

57.1

99.699

0.569