Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EFD52_RS04805 Genome accession   NZ_CP033606
Coordinates   969989..970669 (+) Length   226 a.a.
NCBI ID   WP_003131898.1    Uniprot ID   Q9CGT5
Organism   Lactococcus lactis strain IL6288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 964989..975669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS04785 (EFD52_04785) - 965353..965868 (+) 516 WP_003131889.1 DUF2127 domain-containing protein -
  EFD52_RS04790 (EFD52_04790) - 965872..967197 (+) 1326 WP_003131891.1 HAMP domain-containing sensor histidine kinase -
  EFD52_RS04795 (EFD52_04795) - 967204..967860 (+) 657 WP_010905677.1 phosphatase PAP2 family protein -
  EFD52_RS04800 (EFD52_04800) glmS 968041..969858 (+) 1818 WP_010905678.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  EFD52_RS04805 (EFD52_04805) radC 969989..970669 (+) 681 WP_003131898.1 DNA repair protein RadC Machinery gene
  EFD52_RS04810 (EFD52_04810) - 970757..971407 (-) 651 WP_021464703.1 redox-sensing transcriptional repressor Rex -
  EFD52_RS04815 (EFD52_04815) - 971632..972024 (+) 393 WP_003132739.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  EFD52_RS04820 (EFD52_04820) - 972202..974109 (+) 1908 WP_021214548.1 ABC-F family ATP-binding cassette domain-containing protein -
  EFD52_RS04825 (EFD52_04825) - 974298..975098 (+) 801 WP_010905736.1 hypothetical protein -
  EFD52_RS04830 (EFD52_04830) - 975100..975465 (+) 366 WP_003132744.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25801.67 Da        Isoelectric Point: 7.9247

>NTDB_id=283756 EFD52_RS04805 WP_003131898.1 969989..970669(+) (radC) [Lactococcus lactis strain IL6288]
MYELKENPYPMQPRERLEFLGEECLSDVELLAILLRTGTKKYSSLNLALEILQHFETLDNLRKASINELREISGIGLAKS
IEIRAMIEFGKRIQTTNRKRYGQVLSSREYGLSLAFEMQNFEQEHLVATYLDGQNRIIEKKTIFIGAVNQATASPREILY
HAIKNLSVGLLVAHNHPSGNLKPSQADKIFTTKIKKSCEDVGINFIDHIIVGAGNYFSFREEEIRK

Nucleotide


Download         Length: 681 bp        

>NTDB_id=283756 EFD52_RS04805 WP_003131898.1 969989..970669(+) (radC) [Lactococcus lactis strain IL6288]
ATGTATGAACTAAAAGAAAATCCGTATCCGATGCAACCTAGGGAACGCTTAGAATTTTTAGGAGAAGAGTGCTTGTCTGA
TGTTGAGCTGTTAGCGATATTATTGCGAACAGGGACAAAAAAATACTCATCATTAAATTTGGCCTTGGAAATTCTTCAAC
ATTTTGAAACTTTGGATAATTTGCGCAAAGCTTCGATTAATGAACTCAGAGAAATTTCAGGCATTGGACTGGCAAAATCC
ATTGAAATTCGAGCAATGATTGAATTTGGAAAAAGGATACAAACCACTAATAGAAAACGTTACGGTCAAGTTTTGAGTTC
CAGAGAATATGGCTTGAGTCTTGCTTTTGAAATGCAAAATTTTGAGCAAGAGCATCTTGTGGCGACTTATTTAGATGGTC
AAAATCGAATTATTGAAAAAAAGACAATTTTTATAGGGGCGGTTAATCAGGCAACTGCAAGCCCTAGAGAGATTCTTTAT
CATGCAATAAAAAATCTCTCAGTAGGACTGTTAGTTGCACATAATCATCCCTCAGGAAATTTAAAACCAAGTCAAGCTGA
TAAAATATTTACTACCAAAATAAAAAAATCTTGCGAGGATGTGGGGATCAATTTTATTGATCATATTATTGTAGGGGCTG
GTAATTATTTTAGCTTTCGGGAAGAAGAGATCAGAAAATGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(5-80)

RadC-like JAB domain (RadC)

(115-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CGT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

45.946

98.23

0.451
  radC Streptococcus pneumoniae R6

45.946

98.23

0.451
  radC Streptococcus pneumoniae D39

45.946

98.23

0.451
  radC Streptococcus gordonii str. Challis substr. CH1

45.045

98.23

0.442
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.541

98.23

0.398