Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C7M30_RS10725 Genome accession   NZ_CP028218
Coordinates   2080246..2080764 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM102756     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2075246..2085764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS10705 (C7M30_02135) yyzM 2076320..2076526 (+) 207 WP_003226838.1 DUF951 family protein -
  C7M30_RS10710 (C7M30_02136) yyaE 2076577..2078580 (+) 2004 WP_070548336.1 molybdopterin-dependent oxidoreductase -
  C7M30_RS10715 (C7M30_02137) ychF 2078707..2079807 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  C7M30_RS10720 (C7M30_02138) rpsF 2079918..2080205 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  C7M30_RS10725 (C7M30_02139) ssbA 2080246..2080764 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  C7M30_RS10730 (C7M30_02140) rpsR 2080808..2081047 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  C7M30_RS10735 (C7M30_02141) xth 2081112..2081870 (+) 759 WP_072173958.1 exodeoxyribonuclease III -
  C7M30_RS10740 (C7M30_02142) ccpB 2081929..2082864 (+) 936 WP_160244376.1 transcriptional regulator CcpB -
  C7M30_RS10745 (C7M30_02143) yyaH 2082920..2083300 (+) 381 WP_160244377.1 VOC family protein -
  C7M30_RS10750 (C7M30_02144) maa 2083316..2083870 (+) 555 WP_160244378.1 sugar O-acetyltransferase -
  C7M30_RS10755 (C7M30_02145) yyaJ 2083904..2085259 (-) 1356 WP_029318525.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=283426 C7M30_RS10725 WP_003219228.1 2080246..2080764(+) (ssbA) [Bacillus subtilis strain SRCM102756]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=283426 C7M30_RS10725 WP_003219228.1 2080246..2080764(+) (ssbA) [Bacillus subtilis strain SRCM102756]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment