Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | C7M29_RS05010 | Genome accession | NZ_CP028217 |
| Coordinates | 966951..967469 (+) | Length | 172 a.a. |
| NCBI ID | WP_003219228.1 | Uniprot ID | A0A063XE16 |
| Organism | Bacillus subtilis strain SRCM102751 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 967513..986162 | 966951..967469 | flank | 44 |
Gene organization within MGE regions
Location: 966951..986162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7M29_RS05010 (C7M29_00988) | ssbA | 966951..967469 (+) | 519 | WP_003219228.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| C7M29_RS05015 (C7M29_00989) | rpsR | 967513..967752 (+) | 240 | WP_003219224.1 | 30S ribosomal protein S18 | - |
| C7M29_RS05020 (C7M29_00990) | xth | 967817..968575 (+) | 759 | WP_029726087.1 | exodeoxyribonuclease III | - |
| C7M29_RS05025 (C7M29_00991) | ccpB | 968634..969569 (+) | 936 | WP_161476527.1 | transcriptional regulator CcpB | - |
| C7M29_RS05030 (C7M29_00992) | yyaH | 969625..970005 (+) | 381 | WP_161476528.1 | VOC family protein | - |
| C7M29_RS05035 (C7M29_00993) | maa | 970021..970575 (+) | 555 | WP_032722825.1 | sugar O-acetyltransferase | - |
| C7M29_RS05040 (C7M29_00994) | yyaJ | 970609..971964 (-) | 1356 | WP_029318525.1 | MFS transporter | - |
| C7M29_RS05045 (C7M29_00995) | yyaK | 972191..973090 (+) | 900 | WP_015250787.1 | type II CAAX endopeptidase family protein | - |
| C7M29_RS05050 (C7M29_00996) | yyaL | 973087..975176 (-) | 2090 | Protein_930 | thioredoxin domain-containing protein | - |
| C7M29_RS05060 (C7M29_00998) | - | 975534..976175 (+) | 642 | WP_161476530.1 | LysE family translocator | - |
| C7M29_RS05065 (C7M29_00999) | - | 976458..977591 (-) | 1134 | WP_161476531.1 | NADH-dependent flavin oxidoreductase | - |
| C7M29_RS05070 (C7M29_01000) | - | 978012..978584 (-) | 573 | WP_161476532.1 | TetR/AcrR family transcriptional regulator | - |
| C7M29_RS05075 (C7M29_01001) | - | 978914..979852 (-) | 939 | WP_161476533.1 | alpha/beta hydrolase | - |
| C7M29_RS05080 (C7M29_01002) | - | 979958..980293 (-) | 336 | WP_161476534.1 | helix-turn-helix domain-containing protein | - |
| C7M29_RS05085 (C7M29_01003) | - | 980453..980908 (+) | 456 | WP_161476535.1 | ester cyclase | - |
| C7M29_RS05090 (C7M29_01004) | - | 981733..981903 (-) | 171 | Protein_937 | DUF255 domain-containing protein | - |
| C7M29_RS21100 | - | 982171..982218 (+) | 48 | WP_224913144.1 | tetracycline resistance efflux system leader peptide | - |
| C7M29_RS05100 (C7M29_01005) | tet(L) | 982252..983628 (+) | 1377 | WP_046664041.1 | tetracycline efflux MFS transporter Tet(L) | - |
| C7M29_RS05105 | - | 983731..983894 (-) | 164 | Protein_940 | DUF255 domain-containing protein | - |
| C7M29_RS05110 (C7M29_01006) | yyaP | 984148..984714 (-) | 567 | WP_161476536.1 | dihydrofolate reductase family protein | - |
| C7M29_RS05115 (C7M29_01007) | yyaQ | 984874..985230 (-) | 357 | WP_029726097.1 | MmcQ/YjbR family DNA-binding protein | - |
| C7M29_RS05120 (C7M29_01008) | satA | 985641..986162 (+) | 522 | WP_161476537.1 | streptothricin N-acetyltransferase SatA | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18742.31 Da Isoelectric Point: 4.7621
>NTDB_id=283323 C7M29_RS05010 WP_003219228.1 966951..967469(+) (ssbA) [Bacillus subtilis strain SRCM102751]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=283323 C7M29_RS05010 WP_003219228.1 966951..967469(+) (ssbA) [Bacillus subtilis strain SRCM102751]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.192 |
100 |
0.599 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
64.151 |
61.628 |
0.395 |
| ssb | Glaesserella parasuis strain SC1401 |
35.519 |
100 |
0.378 |