Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D9Y32_RS23630 Genome accession   NZ_CP033218
Coordinates   2788585..2788815 (+) Length   76 a.a.
NCBI ID   WP_260677291.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2783585..2793815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS23095 - 2784617..2784775 (-) 159 WP_155392166.1 hypothetical protein -
  D9Y32_RS14320 (D9Y32_14340) spoIIP 2784796..2785953 (-) 1158 WP_009327852.1 stage II sporulation protein P -
  D9Y32_RS24090 (D9Y32_14345) - 2786157..2786687 (+) 531 WP_021837581.1 MauE/DoxX family redox-associated membrane protein -
  D9Y32_RS14325 (D9Y32_14350) - 2786684..2787229 (+) 546 WP_017474332.1 thioredoxin-like domain-containing protein -
  D9Y32_RS23625 - 2787481..2788419 (+) 939 WP_260677290.1 ABC transporter transmembrane domain-containing protein -
  D9Y32_RS23630 comA 2788585..2788815 (+) 231 WP_260677291.1 ATP-binding cassette domain-containing protein Regulator
  D9Y32_RS23635 comA/nlmT 2788896..2789288 (+) 393 WP_260677292.1 ABC transporter ATP-binding protein Regulator
  D9Y32_RS14335 (D9Y32_14360) sigK 2789784..2790509 (-) 726 WP_142782507.1 RNA polymerase sporulation sigma factor SigK -
  D9Y32_RS14340 (D9Y32_14365) - 2790744..2790980 (+) 237 WP_003183727.1 hypothetical protein -
  D9Y32_RS14345 (D9Y32_14370) - 2791056..2791535 (-) 480 WP_003183725.1 DUF1641 domain-containing protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8500.85 Da        Isoelectric Point: 4.7023

>NTDB_id=282791 D9Y32_RS23630 WP_260677291.1 2788585..2788815(+) (comA) [Bacillus licheniformis strain TCCC 11148]
MEIKDKEKVAIVGHNGSGKTTLIQLIIGLYKPTAGNIFLEGKDLCQIDENELSEYVSVVFQDFVRYALSVKENILL

Nucleotide


Download         Length: 231 bp        

>NTDB_id=282791 D9Y32_RS23630 WP_260677291.1 2788585..2788815(+) (comA) [Bacillus licheniformis strain TCCC 11148]
TTGGAAATAAAGGATAAAGAAAAAGTTGCGATTGTAGGTCATAATGGTTCAGGAAAAACTACATTGATTCAATTGATTAT
CGGTCTATATAAACCCACTGCCGGAAACATCTTTTTAGAAGGAAAAGATTTATGCCAAATAGACGAAAATGAGTTAAGTG
AGTATGTTAGCGTTGTTTTCCAAGACTTTGTTAGATATGCCTTGTCAGTTAAAGAAAATATATTGCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(2-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

39.474

100

0.395
  comA Streptococcus pneumoniae Rx1

38.158

100

0.382
  comA/nlmT Streptococcus mutans UA159

38.158

100

0.382
  comA Streptococcus pneumoniae R6

38.158

100

0.382
  comA Streptococcus mitis NCTC 12261

38.158

100

0.382
  comA Streptococcus pneumoniae D39

38.158

100

0.382
  comA Streptococcus pneumoniae TIGR4

36.842

100

0.368