Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M21_RS08000 Genome accession   NZ_CP028207
Coordinates   1573932..1574576 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SRCM102743     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1568932..1579576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M21_RS07975 (C7M21_01596) - 1569375..1569716 (-) 342 WP_069006914.1 hypothetical protein -
  C7M21_RS07980 (C7M21_01597) degQ 1570181..1570321 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  C7M21_RS07985 (C7M21_01598) - 1570473..1571384 (+) 912 WP_081111611.1 polyprenyl synthetase family protein -
  C7M21_RS07990 (C7M21_01599) comX 1571384..1571548 (+) 165 WP_061581461.1 competence pheromone ComX -
  C7M21_RS07995 (C7M21_01600) comP 1571560..1573851 (+) 2292 WP_160223246.1 histidine kinase Regulator
  C7M21_RS08000 (C7M21_01601) comA 1573932..1574576 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  C7M21_RS08005 (C7M21_01602) - 1574598..1574981 (+) 384 WP_012118312.1 hotdog fold thioesterase -
  C7M21_RS08010 (C7M21_01603) mnhG 1575021..1575395 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  C7M21_RS08015 (C7M21_01604) - 1575379..1575663 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  C7M21_RS08020 (C7M21_01605) - 1575663..1576139 (-) 477 WP_160223245.1 Na+/H+ antiporter subunit E -
  C7M21_RS08025 (C7M21_01606) - 1576145..1577626 (-) 1482 WP_080130026.1 Na+/H+ antiporter subunit D -
  C7M21_RS08030 (C7M21_01607) - 1577619..1577960 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  C7M21_RS08035 (C7M21_01608) - 1577960..1578391 (-) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=282714 C7M21_RS08000 WP_003152052.1 1573932..1574576(+) (comA) [Bacillus velezensis strain SRCM102743]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=282714 C7M21_RS08000 WP_003152052.1 1573932..1574576(+) (comA) [Bacillus velezensis strain SRCM102743]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment