Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   C7M19_RS19275 Genome accession   NZ_CP028205
Coordinates   3910350..3911129 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM102741     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3905350..3916129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M19_RS19255 (C7M19_03891) trmFO 3906037..3907344 (+) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M19_RS19260 (C7M19_03892) xerC 3907414..3908331 (+) 918 WP_032871470.1 tyrosine recombinase XerC -
  C7M19_RS19265 (C7M19_03893) hslV 3908347..3908892 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  C7M19_RS19270 (C7M19_03894) hslU 3908909..3910312 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  C7M19_RS19275 (C7M19_03895) codY 3910350..3911129 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  C7M19_RS19280 (C7M19_03896) flgB 3911483..3911872 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  C7M19_RS19285 (C7M19_03897) flgC 3911872..3912324 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  C7M19_RS19290 (C7M19_03898) fliE 3912335..3912655 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  C7M19_RS19295 (C7M19_03899) fliF 3912698..3914308 (+) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  C7M19_RS19300 (C7M19_03900) fliG 3914321..3915337 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  C7M19_RS19305 (C7M19_03901) fliH 3915330..3916085 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=282607 C7M19_RS19275 WP_003154263.1 3910350..3911129(+) (codY) [Bacillus velezensis strain SRCM102741]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=282607 C7M19_RS19275 WP_003154263.1 3910350..3911129(+) (codY) [Bacillus velezensis strain SRCM102741]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment