Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C7M17_RS15815 Genome accession   NZ_CP028202
Coordinates   3015321..3015839 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM102754     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3010321..3020839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS15795 (C7M17_03119) yyzM 3011395..3011601 (+) 207 WP_003226838.1 DUF951 family protein -
  C7M17_RS15800 (C7M17_03120) yyaE 3011652..3013655 (+) 2004 WP_160245409.1 molybdopterin-dependent oxidoreductase -
  C7M17_RS15805 (C7M17_03121) ychF 3013782..3014882 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  C7M17_RS15810 (C7M17_03122) rpsF 3014993..3015280 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  C7M17_RS15815 (C7M17_03123) ssbA 3015321..3015839 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  C7M17_RS15820 (C7M17_03124) rpsR 3015883..3016122 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  C7M17_RS15825 (C7M17_03125) xth 3016187..3016945 (+) 759 WP_015250782.1 exodeoxyribonuclease III -
  C7M17_RS15830 (C7M17_03126) ccpB 3017005..3017940 (+) 936 WP_160245410.1 transcriptional regulator CcpB -
  C7M17_RS15835 (C7M17_03127) yyaH 3017996..3018376 (+) 381 WP_048654831.1 VOC family protein -
  C7M17_RS15840 (C7M17_03128) maa 3018394..3018948 (+) 555 WP_032722825.1 sugar O-acetyltransferase -
  C7M17_RS15845 (C7M17_03129) yyaJ 3018982..3020337 (-) 1356 WP_160245411.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=282437 C7M17_RS15815 WP_003219228.1 3015321..3015839(+) (ssbA) [Bacillus subtilis strain SRCM102754]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=282437 C7M17_RS15815 WP_003219228.1 3015321..3015839(+) (ssbA) [Bacillus subtilis strain SRCM102754]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment