Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   C7M17_RS01980 Genome accession   NZ_CP028202
Coordinates   344470..345087 (+) Length   205 a.a.
NCBI ID   WP_122894878.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 339470..350087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS01945 (C7M17_00372) aroE 340128..340970 (+) 843 WP_015714291.1 shikimate dehydrogenase -
  C7M17_RS01950 (C7M17_00373) yhbY 340964..341254 (+) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  C7M17_RS01955 (C7M17_00374) nadD 341266..341835 (+) 570 WP_021480066.1 nicotinate-nucleotide adenylyltransferase -
  C7M17_RS01960 (C7M17_00375) yqeK 341825..342385 (+) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  C7M17_RS01965 (C7M17_00376) rsfS 342403..342759 (+) 357 WP_014480315.1 ribosome silencing factor -
  C7M17_RS01970 (C7M17_00377) yqeM 342756..343499 (+) 744 WP_122894876.1 class I SAM-dependent methyltransferase -
  C7M17_RS01975 (C7M17_00378) comER 343565..344386 (-) 822 WP_160245073.1 late competence protein ComER -
  C7M17_RS01980 (C7M17_00379) comEA 344470..345087 (+) 618 WP_122894878.1 competence protein ComEA Machinery gene
  C7M17_RS01985 (C7M17_00380) comEB 345154..345723 (+) 570 WP_003229978.1 ComE operon protein 2 -
  C7M17_RS01990 (C7M17_00381) comEC 345727..348057 (+) 2331 WP_160245074.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C7M17_RS01995 (C7M17_00382) yqzM 348097..348231 (-) 135 WP_003229983.1 YqzM family protein -
  C7M17_RS02000 - 348272..348421 (+) 150 WP_003229985.1 hypothetical protein -
  C7M17_RS02005 (C7M17_00383) holA 348461..349504 (+) 1044 WP_003229987.1 DNA polymerase III subunit delta -
  C7M17_RS02010 (C7M17_00384) rpsT 349519..349785 (-) 267 WP_003229989.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21827.58 Da        Isoelectric Point: 4.9552

>NTDB_id=282384 C7M17_RS01980 WP_122894878.1 344470..345087(+) (comEA) [Bacillus subtilis strain SRCM102754]
MNWLNQHKKTIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESSETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSKQADEAQVNLAEVLQDGTVVYIPKKGEETAVQQGTGGSVQSDGGKGPLVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=282384 C7M17_RS01980 WP_122894878.1 344470..345087(+) (comEA) [Bacillus subtilis strain SRCM102754]
ATGAATTGGTTGAATCAGCATAAGAAAACAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAGCGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCAGGCGGGACCAGTAAACAAGCAGACGAAGCGCAAGTAAATTTGGCCGA
GGTTCTTCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTACCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGGCCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

97.073

100

0.971
  comEA Staphylococcus aureus MW2

36.364

100

0.39
  comEA Staphylococcus aureus N315

36.364

100

0.39

Multiple sequence alignment