Detailed information NTG0282211

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: SAST45_RS08245
• Genome accession: NZ_CP033114
• Coordinates: 1727687..1728373 (-)
• Length: 228 a.a.
• NCBI ID: WP_000692881.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain ST20130945
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1722687..1733373

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SAST45_RS08200 (SAST45_01803)	rpmA	1723401..1723685 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SAST45_RS08205 (SAST45_01804)	-	1723697..1724017 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SAST45_RS08210 (SAST45_04905)	rplU	1724023..1724331 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SAST45_RS08215 (SAST45_01806)	mreD	1724624..1725154 (-)	531	WP_001259929.1	rod shape-determining protein MreD	-
SAST45_RS08220 (SAST45_01807)	mreC	1725154..1725996 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
SAST45_RS08225 (SAST45_04475)	-	1726196..1726315 (-)	120	WP_000840603.1	hypothetical protein	-
SAST45_RS08230 (SAST45_04474)	-	1726389..1726862 (-)	474	WP_001236733.1	DUF4930 family protein	-
SAST45_RS08235	-	1727022..1727219 (+)	198	WP_000025835.1	hypothetical protein	-
SAST45_RS08240 (SAST45_04473)	-	1727335..1727619 (-)	285	WP_000171861.1	hypothetical protein	-
SAST45_RS08245 (SAST45_01810)	ysxA/radC	1727687..1728373 (-)	687	WP_000692881.1	RadC family protein	Machinery gene
SAST45_RS08250 (SAST45_04904)	-	1728370..1729077 (-)	708	WP_000261106.1	prepilin peptidase	-
SAST45_RS08255 (SAST45_04472)	-	1729338..1730609 (-)	1272	WP_001108339.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-
SAST45_RS08260 (SAST45_01813)	-	1730622..1733252 (-)	2631	WP_000425358.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 25345.25 Da
• Isoelectric Point: 6.7572

>NTDB_id=282211 SAST45_RS08245 WP_000692881.1 1727687..1728373(-) (ysxA/radC) [Staphylococcus aureus strain ST20130945]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREFFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

• Length: 687 bp

>NTDB_id=282211 SAST45_RS08245 WP_000692881.1 1727687..1728373(-) (ysxA/radC) [Staphylococcus aureus strain ST20130945]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CATCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCGGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAATTTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
AATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGAATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (103-222)

• UPF0758 N-terminal (UPF0758_N) (3-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus gordonii str. Challis substr. CH1	39.45	95.614	0.377
radC	Streptococcus pneumoniae TIGR4	40.566	92.982	0.377
radC	Streptococcus pneumoniae R6	40.094	92.982	0.373
radC	Streptococcus pneumoniae D39	40.094	92.982	0.373