Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SPCG_RS06160 Genome accession   NC_010582
Coordinates   1173011..1173691 (-) Length   226 a.a.
NCBI ID   WP_000286920.1    Uniprot ID   -
Organism   Streptococcus pneumoniae CGSP14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1168011..1178691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPCG_RS06125 (SPCG_1183) - 1168242..1168811 (+) 570 WP_000681292.1 CYTH domain-containing protein -
  SPCG_RS06130 (SPCG_1184) - 1168924..1169883 (+) 960 WP_001283813.1 ribose-phosphate diphosphokinase -
  SPCG_RS06135 (SPCG_1185) - 1169893..1171008 (+) 1116 WP_000639662.1 cysteine desulfurase family protein -
  SPCG_RS06140 (SPCG_1186) - 1171013..1171360 (+) 348 WP_000863509.1 DUF1831 domain-containing protein -
  SPCG_RS06145 (SPCG_1187) - 1171368..1171583 (+) 216 WP_000462488.1 DUF4649 family protein -
  SPCG_RS06150 (SPCG_1188) - 1171666..1172307 (+) 642 WP_000653403.1 redox-sensing transcriptional repressor Rex -
  SPCG_RS06155 (SPCG_1189) - 1172325..1173014 (+) 690 WP_000743316.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SPCG_RS06160 (SPCG_1190) radC 1173011..1173691 (-) 681 WP_000286920.1 RadC family protein Machinery gene
  SPCG_RS06165 (SPCG_1191) pcrA 1173734..1176025 (-) 2292 WP_000992840.1 DNA helicase PcrA -
  SPCG_RS13815 - 1176216..1177020 (-) 805 Protein_1166 IS5 family transposase -
  SPCG_RS06185 (SPCG_1194) - 1177401..1178261 (-) 861 WP_000631538.1 methionyl aminopeptidase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25517.50 Da        Isoelectric Point: 7.1203

>NTDB_id=28219 SPCG_RS06160 WP_000286920.1 1173011..1173691(-) (radC) [Streptococcus pneumoniae CGSP14]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEIESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=28219 SPCG_RS06160 WP_000286920.1 1173011..1173691(-) (radC) [Streptococcus pneumoniae CGSP14]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGCTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATAGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGTTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTTCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAACTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(13-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

99.558

100

0.996
  radC Streptococcus pneumoniae R6

99.115

100

0.991
  radC Streptococcus pneumoniae D39

99.115

100

0.991
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447

Multiple sequence alignment